View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2238_low_2 (Length: 533)
Name: NF2238_low_2
Description: NF2238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2238_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 27583871 - 27584373
Alignment:
| Q |
19 |
cacctcaacatagtttttcttcaatccttcctcataaataaataattaaatttattttatctctcttttcaatatggctcaagagcttgagaacaagttg |
118 |
Q |
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| T |
27583871 |
cacctcaacatagtttttcttcaatccttcctcataaataaataattaaatttattttatctctcttttcaatatggctcaagagcttgagaacaagttg |
27583970 |
T |
|
| Q |
119 |
gaagaagagcaagtaaggtccataggagagttacagaagctgagcatcttcccctcaccttggtgacagccattttcctaacaggtctgattacaataac |
218 |
Q |
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| T |
27583971 |
gaagaagagcaagtgaggtccataggagagttacagaagctgagcatcttcc--tcaccttggtgacagccattttcctaacaggcatgattacaataac |
27584068 |
T |
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| Q |
219 |
atcatcgtcagcaacatcagcggtagatgcaagagacagtctatattccatgatgttctcttttgggatcttcctccacttaacttttatgtccttcagc |
318 |
Q |
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| T |
27584069 |
atcatcatcagcaacatcagcggtagatgcaagagacagtctatattccatgatgttttcttttgggatcttcctccacttaacttttgtgtccttcagc |
27584168 |
T |
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| Q |
319 |
ttacgcttctcgctgtttcgcttttgcaagaccatcatttcatgtctcattgcatatggacttctttctggatcctttcttctatttcattcccttcata |
418 |
Q |
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| T |
27584169 |
ttacgcttctcgctgtttcgcttttgcaagaccatcatttcatgtctcattgcatatggacttctttctggctcctttcttctatttcattcccttcata |
27584268 |
T |
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| Q |
419 |
cactacttagcatcatacttgttggtggtggtaccaactcctatctttcgcttcttacattcactatgatacttgttttatgctttgttatcattgtcgc |
518 |
Q |
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| T |
27584269 |
cactacttagcatcataattgttggtggtggtaccaactcctatctttcgcttcttacattcactatgatacttgttttatgctttgttatcattgccgc |
27584368 |
T |
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| Q |
519 |
ctatg |
523 |
Q |
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|||| |
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| T |
27584369 |
ttatg |
27584373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 74 - 506
Target Start/End: Original strand, 27597777 - 27598184
Alignment:
| Q |
74 |
tttatctctcttttcaatatggctcaagagcttgagaacaagttggaagaagagcaagtaaggtccataggagagttacagaagctgagcatcttcccct |
173 |
Q |
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||||||||||| |||||| |||||| |||||||||||||| || |||||||| ||||| |||||||| | |||||| ||||||||||||||| ||| | |
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| T |
27597777 |
tttatctctctcttcaat--ggctcatgagcttgagaacaaattagaagaagaccaagtgaggtccatggaagagttgcagaagctgagcatcctcc--t |
27597872 |
T |
|
| Q |
174 |
caccttggtgacagccattttcctaacaggtctgattacaataacatcatcgtcagcaacatcagcggtagatgcaagagacagtctatattccatgatg |
273 |
Q |
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| T |
27597873 |
caccttggtgacagccattttcctaacaggcctgattataataacatcatc---agcaacatcagcagtagatgcaagacacagtctatattccatgatg |
27597969 |
T |
|
| Q |
274 |
ttctcttttgggatcttcctccacttaacttttatgtccttcagcttacgcttctcgctgtttcgcttttgcaagaccatcatttcatgtctcattgcat |
373 |
Q |
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| T |
27597970 |
gcctcttttgtgtttttcctttgcttaactttcatgtccttcagcttacgcttctccctgtttc------gcatgaccattacttcatgtgtcat----- |
27598058 |
T |
|
| Q |
374 |
atggacttctttctggatcctttcttctatttcattcccttcatacactacttagcatcatacttgttggtggtggtaccaactcctatctttcgcttct |
473 |
Q |
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|| ||||| ||||| ||||||||||| ||| |||||||| ||||||||||||||||| || ||||||||||||||||| | |||| || || |
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| T |
27598059 |
-tgtacttcaatctggctcctttcttctgcttctatcccttcacacactacttagcatcattct------tggtggtaccaactcctctttttccctcct |
27598151 |
T |
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| Q |
474 |
tacattcactatgatacttgttttatgctttgt |
506 |
Q |
| |
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| | |||||||| || |||||||||||||||| |
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| T |
27598152 |
tctactcactatgctatttgttttatgctttgt |
27598184 |
T |
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