View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2238_low_3 (Length: 360)
Name: NF2238_low_3
Description: NF2238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2238_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 126 - 339
Target Start/End: Complemental strand, 8039762 - 8039551
Alignment:
| Q |
126 |
gtgattttgcctctcaaataggctggacaattaagttttgtgtgaatgtatctaaacaatgtcattttacattcaacgaactagtctaaatcaagaacaa |
225 |
Q |
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| T |
8039762 |
gtgattttgcctctcaaataggctggacaattaaggtttgtgtgaatgtatctaaacaatgtcattttacattcaacgaactagtctaaatcaagaacaa |
8039663 |
T |
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| Q |
226 |
aaacacactaagccatacggggcatatattttagtgtgtgatcatgtttagtgttcattttctctttacttgcatcatattaaggcttttgatgaaaata |
325 |
Q |
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| T |
8039662 |
aaacacactaagccatatggg--acatattttagtgtgtgatcatgtttaatgttcattttctctttacttgcatcatattaacgcttttgatgaaaata |
8039565 |
T |
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| Q |
326 |
attgtgatgctcat |
339 |
Q |
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| T |
8039564 |
attgtgatgctcat |
8039551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 126 - 338
Target Start/End: Complemental strand, 8027648 - 8027438
Alignment:
| Q |
126 |
gtgattttgcctctcaaataggctggacaattaagttttgtgtgaatgtatctaaacaatgtcattttacattcaacgaactagtctaaatcaagaacaa |
225 |
Q |
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| T |
8027648 |
gtgattttccctctcaaattggctggacaattaagttttttgtgaatgtatctaaacgatgtcattttacattcaactaactaatctaaatcaagaacaa |
8027549 |
T |
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| Q |
226 |
aaacacactaagccatacggggcatatattttagtgtgtgatcatgtttagtgttcattttctctttacttgcatcatattaaggcttttgatgaaaata |
325 |
Q |
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| T |
8027548 |
aaacacactaagccatatggg--acatattttagtgtgtgatcatgtttaatgttcattttctctttacttgcatcatattaacgcttttgatgaaaata |
8027451 |
T |
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| Q |
326 |
attgtgatgctca |
338 |
Q |
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| T |
8027450 |
attgtgattctca |
8027438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 8039884 - 8039828
Alignment:
| Q |
5 |
aaattattgagtcaaaaatttcaaattctatcttcaattaag-aaatatccaatcat |
60 |
Q |
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| T |
8039884 |
aaattgttgagtcaaaaatttcaaatactatcttcaattaagaaaatatccaatcat |
8039828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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