View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2238_low_6 (Length: 298)

Name: NF2238_low_6
Description: NF2238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2238_low_6
NF2238_low_6
[»] chr5 (10 HSPs)
chr5 (195-293)||(39310823-39310921)
chr5 (195-287)||(38749919-38750011)
chr5 (113-173)||(38848805-38848865)
chr5 (113-173)||(39310537-39310597)
chr5 (195-292)||(38849091-38849188)
chr5 (115-169)||(38750241-38750295)
chr5 (114-173)||(38807565-38807624)
chr5 (124-173)||(38865802-38865851)
chr5 (202-237)||(38868048-38868083)
chr5 (48-76)||(39310332-39310360)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 195 - 293
Target Start/End: Original strand, 39310823 - 39310921
Alignment:
Q  195 gaagattataaaccattgcatattctatgttttaaaagatgtggaagatttaattgctcagatatataatggtcttgagttggaaacattcatctcact 293  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||| |||||    
T  39310823 gaagtttataaaccattgcatattctatgttttaaacgatgtgggacattttattgctcagatatattatggtcttgagttggaaacattcatgtcact 39310921  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 38750011 - 38749919
Alignment:
Q  195 gaagattataaaccattgcatattctatgttttaaaagatgtggaagatttaattgctcagatatataatggtcttgagttggaaacattcat 287  Q
    |||| |||||||||||| ||||||||||||| |||| ||||||| | |||| ||||||||||||||| |||||||||||||||||| ||||||    
T  38750011 gaaggttataaaccatttcatattctatgttctaaacgatgtgggacattttattgctcagatatattatggtcttgagttggaaagattcat 38749919  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 38848805 - 38848865
Alignment:
Q  113 catatgggctgagaatacagcagcttgtgatccctccactgtcgagagaaggaagtgttca 173  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  38848805 catacgggctgagaatacagcagcctgtgatccctccactgtcaagagaaggaagtgttca 38848865  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 39310537 - 39310597
Alignment:
Q  113 catatgggctgagaatacagcagcttgtgatccctccactgtcgagagaaggaagtgttca 173  Q
    |||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  39310537 catatgggctgagaatactgcagcctgtgatccctccactgtcaagagaaggaagtgttca 39310597  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 38849091 - 38849188
Alignment:
Q  195 gaagattataaaccattgcatattctatgttttaaaagatgtggaagatttaattgctcagatatataatggtcttgagttggaaacattcatctcac 292  Q
    |||| ||||||||| || ||||| || |||| |||| ||||||| | |||| ||||||||||||||| |||||||||||||| |||||||||| ||||    
T  38849091 gaagcttataaaccgtttcatatgctttgttctaaacgatgtgggacattttattgctcagatatattatggtcttgagttgtaaacattcatgtcac 38849188  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 38750295 - 38750241
Alignment:
Q  115 tatgggctgagaatacagcagcttgtgatccctccactgtcgagagaaggaagtg 169  Q
    |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  38750295 tatgggctgagaatacagcagcctgtaatccctccactgtcaagagaaggaagtg 38750241  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 38807624 - 38807565
Alignment:
Q  114 atatgggctgagaatacagcagcttgtgatccctccactgtcgagagaaggaagtgttca 173  Q
    |||||| | |||||| ||||||| ||| ||||||||||||||||||||||||||||||||    
T  38807624 atatggaccgagaatgcagcagcctgtaatccctccactgtcgagagaaggaagtgttca 38807565  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 38865802 - 38865851
Alignment:
Q  124 agaatacagcagcttgtgatccctccactgtcgagagaaggaagtgttca 173  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  38865802 agaatactgcagcctgtgatccctccactgtcaagagaaggaagtgttca 38865851  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 38868048 - 38868083
Alignment:
Q  202 ataaaccattgcatattctatgttttaaaagatgtg 237  Q
    ||||||||||||||||||||||||||||| ||||||    
T  38868048 ataaaccattgcatattctatgttttaaacgatgtg 38868083  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 39310332 - 39310360
Alignment:
Q  48 tcaactgacaaataatatttacctaggta 76  Q
    |||||||||||||||||||||||||||||    
T  39310332 tcaactgacaaataatatttacctaggta 39310360  T

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