View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2238_low_8 (Length: 283)
Name: NF2238_low_8
Description: NF2238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2238_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 89 - 274
Target Start/End: Complemental strand, 17922371 - 17922189
Alignment:
| Q |
89 |
tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcccaaataaaacaacaaacatttcattgtcaaatgattttacttct |
188 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||| |
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| T |
17922371 |
tcaaatctttattaaa--atgtgtttaattcataagtatattaaactttgtttgcccaaataaaacaacaatcaattcat-gtgaaatgattttacttct |
17922275 |
T |
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| Q |
189 |
tactatattactagatatgaatgagttacttccctggcagttagaatcaaacttaattttaaactctaaagtcaatcatgttaatc |
274 |
Q |
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|| |||||||| ||||||||||||||||||||| || | |||||||||||||| |||||||| | ||| |||||||| |||||||| |
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| T |
17922274 |
tagtatattaccagatatgaatgagttacttccttgactgttagaatcaaactcaattttaatccctagagtcaatcttgttaatc |
17922189 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 89 - 274
Target Start/End: Original strand, 12949853 - 12950037
Alignment:
| Q |
89 |
tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcccaaataaaacaacaaacatttcattgtcaaatgattttacttct |
188 |
Q |
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|||||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||| || |||||| | |||||||||||||||| |
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| T |
12949853 |
tcaaatctttattaaa--atgtgtttaattcataagtatattaaactttgtttgcccaaataaaacaacaatcaattcatt-tgaaatgattttacttct |
12949949 |
T |
|
| Q |
189 |
tactatattactagatatgaatg---agttacttccctggcagttagaatcaaacttaattttaaactctaaagtcaatcatgttaatc |
274 |
Q |
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| T |
12949950 |
tggtatattattacatatgaatgatcagttacttccttggcagttagaatcaaacttaattttaaactc-aaaatcaatcatgttaatc |
12950037 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 12900818 - 12900964
Alignment:
| Q |
130 |
taaactttgtttgcccaaataaaacaacaaacatttcattgtcaaatgattttacttcttactatattactagatatgaatg---agttacttccctggc |
226 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||| |||||||||| ||| |
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| T |
12900818 |
taaactttgtttgcccaaataaaagaacaaacatttcattgtgaaatgattttacttcttagtgtattactacatatgaatgatcagttacttcctaggc |
12900917 |
T |
|
| Q |
227 |
agttagaatcaaacttaattttaaactctaaagtcaatcatgttaatc |
274 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
12900918 |
agttagaatcaaacttaattttaaactc-aaaatcaatcatgttaatc |
12900964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 12959330 - 12959489
Alignment:
| Q |
110 |
tgtttaattcctaagcatcttaaactttgtttgcccaaataaaacaacaaacatttcattgtcaaatgattttacttcttactatattactagatatgaa |
209 |
Q |
| |
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|||| |||||||||| |||||||| | | |||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||| |
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| T |
12959330 |
tgttcaattcctaagtatcttaaaatatatttgcccaaataaaacaataaacatttcattgtgaaatgattttacttctta-----ttactaaatatgaa |
12959424 |
T |
|
| Q |
210 |
tgagttacttccctggcagttagaatcaaacttaattttaaactctaaagtcaatcatgttaatc |
274 |
Q |
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|||||||||| | | |||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
12959425 |
tgagttacttacttcgcagttagaatcgaacttaattttaaactctaaagtcaataatgttaatc |
12959489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 18556321 - 18556479
Alignment:
| Q |
110 |
tgtttaattcctaagcatcttaaactttgtttgcccaaataaaacaacaaacatttcattgtcaaatgattttacttcttactatattactagatatgaa |
209 |
Q |
| |
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|||| |||||||||| |||||||| ||||||||||||| | ||| |||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
18556321 |
tgttcaattcctaagtatcttaaaacatgtttgcccaaattag-caataaacatttcattgtgaaatgattttacttctta-----ttactagatatgaa |
18556414 |
T |
|
| Q |
210 |
tgagttacttccctggcagttagaatcaaacttaattttaaactctaaagtcaatcatgttaatc |
274 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
18556415 |
tgagttacttgcatggcagttagaatcaaacttaattttaaattctaaagtcaataatgttaatc |
18556479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 12933488 - 12933588
Alignment:
| Q |
89 |
tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcccaaataaaacaacaaacatttcattgtcaaatgattttacttct |
188 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| | |||||| |||| ||| || ||||||||||||| |
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| T |
12933488 |
tcaaatctttattaaaatatgtgttcaattcctaagtatcttaaactttgtttgcccaaataaaaaagcaaacaattca-tgtgaactgattttacttct |
12933586 |
T |
|
| Q |
189 |
ta |
190 |
Q |
| |
|
|| |
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|
| T |
12933587 |
ta |
12933588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 12908409 - 12908509
Alignment:
| Q |
89 |
tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcccaaataaaacaacaaacatttcattgtcaaatgattttacttct |
188 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| | |||||| || | ||| || ||||||||||||| |
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| T |
12908409 |
tcaaatctttattaaaatatgtgttcaattcctaagtatcttaaactttgtttgcccaaataaaaaagcaaacaattta-tgtgaactgattttacttct |
12908507 |
T |
|
| Q |
189 |
ta |
190 |
Q |
| |
|
|| |
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|
| T |
12908508 |
ta |
12908509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 6151907 - 6151952
Alignment:
| Q |
228 |
gttagaatcaaacttaattttaaactctaaagtcaatcatgttaat |
273 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
6151907 |
gttagaaccaaacttaattttaaaccttaaagtcaatcatgttaat |
6151952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 20526545 - 20526499
Alignment:
| Q |
228 |
gttagaatcaaacttaattttaaactctaaagtcaatcatgttaatc |
274 |
Q |
| |
|
||||||| ||||||| ||||||||||||| | ||||||||||||||| |
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|
| T |
20526545 |
gttagaaacaaacttgattttaaactctagattcaatcatgttaatc |
20526499 |
T |
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