View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2239_high_3 (Length: 401)
Name: NF2239_high_3
Description: NF2239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2239_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 627459 - 627846
Alignment:
| Q |
17 |
tatgcatgtactaattaaggtacaatacaaacctgatgagagaaatgttactgcttaatttggatataacttcacaacatattgtgcatggagtttttga |
116 |
Q |
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| T |
627459 |
tatgcatgtactaattaaggtacaatacaaacctgatgagagaaatgttactgcttaatttggatataacttcacaacatattgtgcatggagtttttga |
627558 |
T |
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| Q |
117 |
gattgatagaaaaggttattgtggatgaagaattgaga-----------gaaaagttagagagtgtgaaaagagtaagtgcaagaccgcgcaagtgttgg |
205 |
Q |
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| T |
627559 |
gattgatagaaaaggttattgtggatgaagaattgagagaaagaagagagaaaagttagagagtgtgaaaagagtaagtgcaagaccgcgcaagtgttgg |
627658 |
T |
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| Q |
206 |
ttagtattattaatcaaagtcacggatgttagacctcatagagtagtaaattagcacatagtattattatacggttggaggaagccaccctaagactcta |
305 |
Q |
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| T |
627659 |
ttggtattattaatcaaagtcacggatgttagacctcatagagtagtaaattagcacatagtattattatacggttggaggaagccaccctaagactcta |
627758 |
T |
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| Q |
306 |
gttgctacttgtgaccaataaatacataactaattaatttactttatcacttttatgttttggtctagattttaacgattttcttctc |
393 |
Q |
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| T |
627759 |
gttgctacttgtgaccaataaatacataactaattaatttactttatcacttttatgttttcgtctagattttaacgattttcttctc |
627846 |
T |
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