View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2239_high_4 (Length: 363)

Name: NF2239_high_4
Description: NF2239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2239_high_4
NF2239_high_4
[»] chr7 (2 HSPs)
chr7 (10-267)||(21407572-21407823)
chr7 (312-344)||(39706643-39706675)
[»] chr3 (5 HSPs)
chr3 (309-343)||(36692173-36692207)
chr3 (307-344)||(46093139-46093176)
chr3 (307-343)||(20400101-20400137)
chr3 (308-344)||(41030188-41030224)
chr3 (307-343)||(55126030-55126066)
[»] chr6 (5 HSPs)
chr6 (306-343)||(17329978-17330015)
chr6 (305-343)||(2617204-2617242)
chr6 (307-343)||(2473627-2473663)
chr6 (307-347)||(21598977-21599017)
chr6 (307-343)||(28046179-28046215)
[»] chr2 (9 HSPs)
chr2 (305-345)||(21497689-21497729)
chr2 (304-343)||(32407561-32407600)
chr2 (313-343)||(231600-231630)
chr2 (305-347)||(29872171-29872213)
chr2 (305-347)||(32957542-32957584)
chr2 (305-343)||(40967370-40967408)
chr2 (307-343)||(12126893-12126929)
chr2 (307-343)||(15333153-15333189)
chr2 (307-339)||(19156165-19156197)
[»] chr4 (2 HSPs)
chr4 (305-343)||(21623418-21623456)
chr4 (307-344)||(3299095-3299132)
[»] chr1 (3 HSPs)
chr1 (305-343)||(434335-434373)
chr1 (302-346)||(3157713-3157757)
chr1 (305-345)||(47070870-47070910)
[»] chr8 (1 HSPs)
chr8 (308-345)||(8694132-8694169)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 21407823 - 21407572
Alignment:
Q  10 aagaatataattagatatatcgagagagttgtgtgttttctaacaaagattagtaatcaacaaagtcggtgaatacttccagttaataatttatttaacc 109  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  21407823 aagaatacaattagatatatcgagagagttgtgt--tttctaacaaagattagtaatcaacaaagtcggtgaatacttccaattaataatttatttaaca 21407726  T
Q  110 aaaaatatatgttttgtcttgatatgaatttgattccctcaaattgaaatttgaaataaaggtttatgtcgaagatctcaacgataaaatttattgagat 209  Q
    |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||    
T  21407725 aaaaatatatgtcttgtgttgatatgaatttgatttcctcaaattgaaatttgaaataga-gattatgtcgaagatctcaacgttaaaatttattgagat 21407627  T
Q  210 cttcattataaccttgcataataataaatctcaacattagagtgctctcttttttcta 267  Q
    |||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  21407626 cttcattataaccttgc---ataataaatctcaatattagagtgctctcttttttcta 21407572  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 39706675 - 39706643
Alignment:
Q  312 aaacctcaaaccttgcatatattatgtattgtt 344  Q
    ||||| |||||||||||||||||||||||||||    
T  39706675 aaaccccaaaccttgcatatattatgtattgtt 39706643  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 36692173 - 36692207
Alignment:
Q  309 tttaaacctcaaaccttgcatatattatgtattgt 343  Q
    |||||||||||||||||||||||||||||||||||    
T  36692173 tttaaacctcaaaccttgcatatattatgtattgt 36692207  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 46093176 - 46093139
Alignment:
Q  307 ggtttaaacctcaaaccttgcatatattatgtattgtt 344  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  46093176 ggtttaaaccacaaaccttgcatatattatgcattgtt 46093139  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 20400137 - 20400101
Alignment:
Q  307 ggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  20400137 ggtttgaacctcagaccttgcatatattatgtattgt 20400101  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 41030224 - 41030188
Alignment:
Q  308 gtttaaacctcaaaccttgcatatattatgtattgtt 344  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  41030224 gtttgaacctcaaaccttgcatattttatgtattgtt 41030188  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 55126066 - 55126030
Alignment:
Q  307 ggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  55126066 ggtttgaacctcgaaccttgcatatattatgtattgt 55126030  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 17329978 - 17330015
Alignment:
Q  306 aggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    |||||||||||||| |||||||||||||||||||||||    
T  17329978 aggtttaaacctcagaccttgcatatattatgtattgt 17330015  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 2617204 - 2617242
Alignment:
Q  305 gaggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  2617204 gaggtttaaacctcaaaccttacatatattatgcattgt 2617242  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 2473663 - 2473627
Alignment:
Q  307 ggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    |||||||||| || |||||||||||||||||||||||    
T  2473663 ggtttaaaccccataccttgcatatattatgtattgt 2473627  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 21599017 - 21598977
Alignment:
Q  307 ggtttaaacctcaaaccttgcatatattatgtattgttcat 347  Q
    |||||||||| |  |||||||||||||||||||||||||||    
T  21599017 ggtttaaaccccgtaccttgcatatattatgtattgttcat 21598977  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 28046179 - 28046215
Alignment:
Q  307 ggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    |||| |||||||||||||||||||||||||| |||||    
T  28046179 ggttcaaacctcaaaccttgcatatattatgcattgt 28046215  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 21497729 - 21497689
Alignment:
Q  305 gaggtttaaacctcaaaccttgcatatattatgtattgttc 345  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  21497729 gaggtttaaacctcgaaccttgcatatattatgcattgttc 21497689  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 32407561 - 32407600
Alignment:
Q  304 tgaggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  32407561 tgaggtttgaacctcaaaccttacatatattatgtattgt 32407600  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 343
Target Start/End: Original strand, 231600 - 231630
Alignment:
Q  313 aacctcaaaccttgcatatattatgtattgt 343  Q
    |||||||||||||||||||||||||||||||    
T  231600 aacctcaaaccttgcatatattatgtattgt 231630  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 29872171 - 29872213
Alignment:
Q  305 gaggtttaaacctcaaaccttgcatatattatgtattgttcat 347  Q
    ||||||| ||||| | |||||||||||||||||||||||||||    
T  29872171 gaggtttgaaccttagaccttgcatatattatgtattgttcat 29872213  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 32957542 - 32957584
Alignment:
Q  305 gaggtttaaacctcaaaccttgcatatattatgtattgttcat 347  Q
    |||||||||||| |||||||| ||||||||||| |||||||||    
T  32957542 gaggtttaaaccccaaaccttacatatattatgcattgttcat 32957584  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 40967370 - 40967408
Alignment:
Q  305 gaggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  40967370 gaggtttgaacctcaaaccttgcatatattatgcattgt 40967408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 12126929 - 12126893
Alignment:
Q  307 ggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  12126929 ggtttgaacctcaaaccttacatatattatgtattgt 12126893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 15333189 - 15333153
Alignment:
Q  307 ggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  15333189 ggtttgaacatcaaaccttgcatatattatgtattgt 15333153  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 19156165 - 19156197
Alignment:
Q  307 ggtttaaacctcaaaccttgcatatattatgta 339  Q
    ||||| |||||||||||||||||||||||||||    
T  19156165 ggtttgaacctcaaaccttgcatatattatgta 19156197  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 21623418 - 21623456
Alignment:
Q  305 gaggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  21623418 gaggtttaaacctcagaccttgcatatattatgcattgt 21623456  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 344
Target Start/End: Original strand, 3299095 - 3299132
Alignment:
Q  307 ggtttaaacctcaaaccttgcatatattatgtattgtt 344  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  3299095 ggtttgaacctcaaaccttgcatatattatgcattgtt 3299132  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 434335 - 434373
Alignment:
Q  305 gaggtttaaacctcaaaccttgcatatattatgtattgt 343  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  434335 gaggtttaaaccccaaaccttacatatattatgtattgt 434373  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 3157713 - 3157757
Alignment:
Q  302 gttgaggtttaaacctcaaaccttgcatatattatgtattgttca 346  Q
    |||| ||||| |||||||||||||| |||||||||| ||||||||    
T  3157713 gttggggtttgaacctcaaaccttgtatatattatgcattgttca 3157757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 47070910 - 47070870
Alignment:
Q  305 gaggtttaaacctcaaaccttgcatatattatgtattgttc 345  Q
    |||||||||||  | ||||||||||||||||||||||||||    
T  47070910 gaggtttaaactccgaaccttgcatatattatgtattgttc 47070870  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 8694132 - 8694169
Alignment:
Q  308 gtttaaacctcaaaccttgcatatattatgtattgttc 345  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  8694132 gtttaaatctcaaaccttgcatatattatgcattgttc 8694169  T

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