View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2239_high_8 (Length: 301)
Name: NF2239_high_8
Description: NF2239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2239_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 50459711 - 50459426
Alignment:
| Q |
13 |
aatatcacctagacatgtgacactgtttcctagctttcttcactgacctccaagaatctcatccatcatgtgaagttaagtgcaacacaatggaaacaga |
112 |
Q |
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| T |
50459711 |
aatatcacctagacatgtgacactgtttcctagctttcttcactgacctccaagaatctcatccatcatgtgaagttaagtgcaacacaatggaaacaga |
50459612 |
T |
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| Q |
113 |
gtatggggtcatgggtttcatatacttaataaatcttctccatcaagtaggaggttggtcaaagttgagaagcaatgaactttcacctattaaatgtata |
212 |
Q |
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| T |
50459611 |
gtatggggtcatgggtttcatatacttaataaatcttctccatcaagtaggaggttggtcaaagttgagaatcaatgaactttcacctattaaatttata |
50459512 |
T |
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| Q |
213 |
cttgtaagaaaaaatggaactaactactcgatcattacatgaatttctcacatgtactccctctgtttttaattataaataaattt |
298 |
Q |
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| T |
50459511 |
cttgtaagaaaaaatggaactaactactcgatctttacatgaatttctcacatgtactccctctgtttttaattataaataaattt |
50459426 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 13853519 - 13853483
Alignment:
| Q |
264 |
atgtactccctctgtttttaattataaataaatttga |
300 |
Q |
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| T |
13853519 |
atgtactccctctgttattaattataaataaaattga |
13853483 |
T |
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