View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2239_low_13 (Length: 245)

Name: NF2239_low_13
Description: NF2239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2239_low_13
NF2239_low_13
[»] chr4 (2 HSPs)
chr4 (1-228)||(50459076-50459300)
chr4 (85-125)||(3067448-3067488)
[»] chr6 (2 HSPs)
chr6 (83-130)||(31702750-31702797)
chr6 (137-175)||(31003853-31003891)
[»] chr8 (4 HSPs)
chr8 (91-130)||(40852101-40852140)
chr8 (84-125)||(5219430-5219471)
chr8 (84-125)||(41676566-41676607)
chr8 (83-119)||(43631490-43631526)
[»] chr2 (2 HSPs)
chr2 (83-130)||(37323938-37323985)
chr2 (85-121)||(8798395-8798431)
[»] chr3 (3 HSPs)
chr3 (91-121)||(29793924-29793954)
chr3 (84-125)||(25548213-25548254)
chr3 (93-130)||(38388771-38388808)
[»] chr7 (1 HSPs)
chr7 (90-131)||(7723362-7723403)
[»] chr5 (1 HSPs)
chr5 (74-119)||(10359130-10359175)
[»] chr1 (3 HSPs)
chr1 (81-130)||(3982312-3982361)
chr1 (109-146)||(7369955-7369992)
chr1 (85-121)||(35438048-35438084)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 50459300 - 50459076
Alignment:
Q  1 ctcactaattaatttctccgaacctcttttagacaatctaaattaataaactatacaatttctaatgtattgataaatggtataatttctaatgcattga 100  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50459300 ctcactaatgaatttctccaaacctcttttagacaatctaaattaataaactatacaatttctaatgtattgataaatggtacaatttctaatgcattga 50459201  T
Q  101 atatacatatttttataaaaatttactattatttaagatctttaaagagtatttcagaacactcgttaacatttctcatatctttatcgttgctatagat 200  Q
    ||||| |||||||||||||||||   ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50459200 atatatatatttttataaaaatt---tatcatttaagatttttaaagagtatttcagaacactcgttaacatttctcatatcttaatcgttgctatagat 50459104  T
Q  201 aagatgatacctaccaaatgtatccatt 228  Q
    ||||||||||||||||||||||||||||    
T  50459103 aagatgatacctaccaaatgtatccatt 50459076  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 3067448 - 3067488
Alignment:
Q  85 atttctaatgcattgaatatacatatttttataaaaattta 125  Q
    |||||||||||||||| |||||||||||| |||||||||||    
T  3067448 atttctaatgcattgattatacatattttcataaaaattta 3067488  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 31702797 - 31702750
Alignment:
Q  83 taatttctaatgcattgaatatacatatttttataaaaatttactatt 130  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||    
T  31702797 taatttctaatgcattgattacacatatttttataaaaagttactatt 31702750  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 31003853 - 31003891
Alignment:
Q  137 gatctttaaagagtatttcagaacactcgttaacatttc 175  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  31003853 gatctttaaagagtgtttcagaacactcgttaacatttc 31003891  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 40852140 - 40852101
Alignment:
Q  91 aatgcattgaatatacatatttttataaaaatttactatt 130  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  40852140 aatgcattgaatatacatattttcataaaaacttactatt 40852101  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 5219471 - 5219430
Alignment:
Q  84 aatttctaatgcattgaatatacatatttttataaaaattta 125  Q
    |||||||||| ||||||||| ||| |||||||||||||||||    
T  5219471 aatttctaatacattgaatacacacatttttataaaaattta 5219430  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 41676566 - 41676607
Alignment:
Q  84 aatttctaatgcattgaatatacatatttttataaaaattta 125  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  41676566 aatttctaatgcattgaatacacgaatttttataaaaattta 41676607  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 43631526 - 43631490
Alignment:
Q  83 taatttctaatgcattgaatatacatatttttataaa 119  Q
    |||||||||||||||||| || |||||||||||||||    
T  43631526 taatttctaatgcattgattacacatatttttataaa 43631490  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 37323938 - 37323985
Alignment:
Q  83 taatttctaatgcattgaatatacatatttttataaaaatttactatt 130  Q
    |||||||||| |||||||||||| | ||||||||||||||||| ||||    
T  37323938 taatttctaaagcattgaatatataaatttttataaaaatttattatt 37323985  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 8798431 - 8798395
Alignment:
Q  85 atttctaatgcattgaatatacatatttttataaaaa 121  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  8798431 atttctaatacattgattatacatatttttataaaaa 8798395  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 29793924 - 29793954
Alignment:
Q  91 aatgcattgaatatacatatttttataaaaa 121  Q
    |||||||||||||||||||||||||||||||    
T  29793924 aatgcattgaatatacatatttttataaaaa 29793954  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 25548254 - 25548213
Alignment:
Q  84 aatttctaatgcattgaatatacatatttttataaaaattta 125  Q
    ||||||||||||||||| || ||||||||| |||||||||||    
T  25548254 aatttctaatgcattgattacacatattttcataaaaattta 25548213  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 38388771 - 38388808
Alignment:
Q  93 tgcattgaatatacatatttttataaaaatttactatt 130  Q
    |||||||| || ||||||||||||||||||||||||||    
T  38388771 tgcattgattacacatatttttataaaaatttactatt 38388808  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 7723362 - 7723403
Alignment:
Q  90 taatgcattgaatatacatatttttataaaaatttactatta 131  Q
    |||||||||||||||||| ||||||||||||| ||| |||||    
T  7723362 taatgcattgaatatacaaatttttataaaaacttattatta 7723403  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 10359130 - 10359175
Alignment:
Q  74 taaatggtataatttctaatgcattgaatatacatatttttataaa 119  Q
    ||||| || ||||||  |||||||||||||||||||||||||||||    
T  10359130 taaatagtttaattttcaatgcattgaatatacatatttttataaa 10359175  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 3982312 - 3982361
Alignment:
Q  81 tataatttctaatgcattgaatatacatatttttataaaaatttactatt 130  Q
    |||||||| |||||||||||||| |||  |||| ||||||||||||||||    
T  3982312 tataatttataatgcattgaatagacaacttttaataaaaatttactatt 3982361  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 7369992 - 7369955
Alignment:
Q  109 atttttataaaaatttactattatttaagatctttaaa 146  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  7369992 atttttataaaaatttactactatttaagatcgttaaa 7369955  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 35438084 - 35438048
Alignment:
Q  85 atttctaatgcattgaatatacatatttttataaaaa 121  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  35438084 atttccaatgcattgaatatacatattttcataaaaa 35438048  T

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