View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2239_low_2 (Length: 449)
Name: NF2239_low_2
Description: NF2239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2239_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 25 - 403
Target Start/End: Complemental strand, 40547462 - 40547079
Alignment:
| Q |
25 |
accttggcttgtataatttgtataggaaatactttagacgagttggattttgaaaaatttatcggaattaaagaaagtctcaagatttagccaatattta |
124 |
Q |
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| T |
40547462 |
accttgacttgtataatttgtatacgaaatactttagacgagttggattttgaaaaatttatcggaattaaagaaagtctgaaaatttagccaatattta |
40547363 |
T |
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| Q |
125 |
tttatagaaataactttgtatatttatcaaagccatatgctaagcattttgcttgagtgaattttaga--------ttcaaggtaagcattgtattcctt |
216 |
Q |
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| T |
40547362 |
tttatagaaataattttgtatatttatcaaagccatatgctaagcattttgcttaagtgaattttagggtttagggtttagggtaagcattgtattcctt |
40547263 |
T |
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| Q |
217 |
ggcatatgc-acattagctactagtggtttagagtcatttcacaaatcgatcacagactcattaatttggtctctatggtgactgaaataactcggtcat |
315 |
Q |
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| T |
40547262 |
ggcatatgccacattagctactagtggtttagagtcatttcacaaatcgatcacagacttatt----tggtctctatggtgactgaaataactcggtcat |
40547167 |
T |
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| Q |
316 |
taaactggttgctaaatggtgaatttttagtggtatatgagcactacgacattcccatgaaaaatgaccaaatttatcactgttataa |
403 |
Q |
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| T |
40547166 |
taaactggttgctacatggtgaatttttagtggtatatgagcactacgacattcccatgaaaaatgaccaaatttatcactgttataa |
40547079 |
T |
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