View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2239_low_3 (Length: 426)
Name: NF2239_low_3
Description: NF2239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2239_low_3 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 15802 - 16193
Alignment:
| Q |
20 |
ttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacat |
119 |
Q |
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||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15802 |
ttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacat |
15901 |
T |
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| Q |
120 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattat |
219 |
Q |
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| T |
15902 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattat |
16001 |
T |
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| Q |
220 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
319 |
Q |
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| T |
16002 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
16101 |
T |
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| Q |
320 |
accagttctacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
411 |
Q |
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| T |
16102 |
accagttctacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
16193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 25970 - 26361
Alignment:
| Q |
20 |
ttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacat |
119 |
Q |
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||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25970 |
ttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacat |
26069 |
T |
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| Q |
120 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattat |
219 |
Q |
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| T |
26070 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattat |
26169 |
T |
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| Q |
220 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
319 |
Q |
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| T |
26170 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
26269 |
T |
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| Q |
320 |
accagttctacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
411 |
Q |
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| T |
26270 |
accagttctacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
26361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 36136 - 36527
Alignment:
| Q |
20 |
ttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacat |
119 |
Q |
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||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36136 |
ttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacat |
36235 |
T |
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| Q |
120 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36236 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattat |
36335 |
T |
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| Q |
220 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36336 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
36435 |
T |
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| Q |
320 |
accagttctacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
411 |
Q |
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| T |
36436 |
accagttctacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
36527 |
T |
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