View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2239_low_6 (Length: 333)
Name: NF2239_low_6
Description: NF2239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2239_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 6426326 - 6426627
Alignment:
| Q |
21 |
aactcgtgataatgattaatgcttaacgtactttgtgaagcaccgacataaatgcagacactgaatacggcactgagaaatagacatatgtaataattta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6426326 |
aactcgtgataatgattaatgcttaacgtactttacgaagcaccgacataaatgcagacactgaatacggcactgagaaatagacatatgtaataattta |
6426425 |
T |
|
| Q |
121 |
aaaaatgaaagttattgaatataacatgtgtgcgacactggataagcctttaatccgaagtgtaagacgtaagcgttacatataatatatttgcttaaga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
6426426 |
aaaaatgaaagttattgaatataacatgtgtgcgacaatggataagcctttaatctgaagtgtaagacgtaagcgttacatagaatatatttgctt---a |
6426522 |
T |
|
| Q |
221 |
agataaattcattaagtaggacatactattatctgtactctatttattgtttgtttcttgcaggcacttgatctgatacgtggcaaaaactacttgatga |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6426523 |
agataaattcattaagtaggacatactattatctgtactctatttattgtttgtttcttgcaggcacttgatctgatacgtggcaaaaactacttgatgt |
6426622 |
T |
|
| Q |
321 |
tgatg |
325 |
Q |
| |
|
||||| |
|
|
| T |
6426623 |
tgatg |
6426627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 26035039 - 26035002
Alignment:
| Q |
103 |
gacatatgtaataatttaaaaaatgaaagttattgaat |
140 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
26035039 |
gacacatgtaataatttaaaaaatgaaagtaattgaat |
26035002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 20407895 - 20407935
Alignment:
| Q |
101 |
tagacatatgtaataattt-aaaaaatgaaagttattgaat |
140 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
20407895 |
tagacatatgtaataatttgaaaaaatgaaagtgattgaat |
20407935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University