View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2239_low_7 (Length: 317)
Name: NF2239_low_7
Description: NF2239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2239_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 16962289 - 16962576
Alignment:
| Q |
19 |
tcaatgacatgtttgagatatgctcaaatacaatgaatattgtgcttgtcattttgggttggtcctcataagtaatagcacagtgtcctaaaacacccac |
118 |
Q |
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| T |
16962289 |
tcaatgacatgtttgagatatgctcaaatacaatgaatattgtgcttgtcattttgggttggtcctcataagtaatagcacagtgtcctaaaacactcac |
16962388 |
T |
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| Q |
119 |
caaatgtctatgccttaaataaggtaacaccttcaaattctgatcactgactttgatcaaactcttctgctttacttttacaagattaaccatgaccatt |
218 |
Q |
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| T |
16962389 |
caaatgtctatgccttaaataaggtaacaccttcaaattctgatcactgactttgatcaaactcttctgctttacttttacaagattaaccatgaccatt |
16962488 |
T |
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| Q |
219 |
gaaccatctttgagccaacctttaaatagctgtgtaaaaaacaagagaaaatgacattacaaattcactcctgtgggccccatttcat |
306 |
Q |
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| T |
16962489 |
gaaccatctttgagccaacctttaaatagctgtgtaaaaaacaagagaaaatgacattacaaattcactcctgtgggccccatttcat |
16962576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 16215310 - 16215388
Alignment:
| Q |
225 |
tctttgagccaacctttaaatagctgtgtaaaaaacaagagaaaatgacattacaaattcactcctgtgggccccatttc |
304 |
Q |
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| T |
16215310 |
tcttcgagccagcctttaaacaactgtgtaaaa-acaagagacaatgccattacaaattcagtcttgtgggccccatttc |
16215388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 48891739 - 48891809
Alignment:
| Q |
181 |
tcttctgctttacttttacaagattaaccatgaccattgaaccatctttgagccaacctttaaatagctgt |
251 |
Q |
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| T |
48891739 |
tcttctgctttagttttacaagattaaccatgagcattgaaccatcctggaacctacctttacctagctgt |
48891809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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