View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2239_low_8 (Length: 307)
Name: NF2239_low_8
Description: NF2239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2239_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 3723137 - 3723417
Alignment:
| Q |
19 |
agtaagaaggtgtatttttcacttaaaagttgtaataaatttaactaattcatttgttcttttataaaacaatgcaaagtaattttcctacatacatata |
118 |
Q |
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| T |
3723137 |
agtaagaaggtgtattttttacttaacagttgtaataaatttaactaattcatttgttcttttataaaacaatgtaaagtaattttcctgcatacatata |
3723236 |
T |
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| Q |
119 |
aggagcaagtaagtattttatcaaacaaaacaaactgtcaacacagaagaatttttcaatgtacctaaattcacatgaacatcatcatcaactttgacat |
218 |
Q |
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| T |
3723237 |
aggagcaagtaagaattttatcaaacaaaacaaactgtaaacgcagaagaatttttcaatgtacctaaattcacatgaacatcatcatcaactttgacat |
3723336 |
T |
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| Q |
219 |
aaaattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgatagttccaaatattcttcgacat |
299 |
Q |
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| T |
3723337 |
aaaattctgcatcccacaaggcaagaacagttgaaaaataggttttcgtcttagctgatagttccaaatatccttcgacat |
3723417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 17124808 - 17124754
Alignment:
| Q |
180 |
tacctaaattcacatgaacatcatcatcaactttgacataaaattctgcatccca |
234 |
Q |
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| T |
17124808 |
tacctatatttacatgaacatcgtcatcaactttgacataaaaatcagcatccca |
17124754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 278
Target Start/End: Original strand, 37186385 - 37186483
Alignment:
| Q |
180 |
tacctaaattcacatgaacatcatcatcaactttgacataaaattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgata |
278 |
Q |
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| T |
37186385 |
tacctatatttacatgaacatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataggtctttgtctttgctgata |
37186483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 33084487 - 33084541
Alignment:
| Q |
180 |
tacctaaattcacatgaacatcatcatcaactttgacataaaattctgcatccca |
234 |
Q |
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| T |
33084487 |
tacctaaattgacatgaacatcgtcatctactttgacatagaaatcagcatccca |
33084541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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