View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2240_high_1 (Length: 1114)

Name: NF2240_high_1
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2240_high_1
NF2240_high_1
[»] chr1 (5 HSPs)
chr1 (12-1101)||(30417280-30418367)
chr1 (160-224)||(15579514-15579579)
chr1 (160-213)||(15437995-15438049)
chr1 (189-247)||(15581316-15581374)
chr1 (177-214)||(27145971-27146008)
[»] chr3 (3 HSPs)
chr3 (161-244)||(37273167-37273251)
chr3 (161-247)||(43115089-43115176)
chr3 (181-214)||(41724266-41724299)
[»] scaffold0147 (1 HSPs)
scaffold0147 (181-218)||(12683-12720)
[»] chr4 (2 HSPs)
chr4 (186-247)||(2874574-2874635)
chr4 (161-214)||(2838297-2838350)
[»] chr6 (5 HSPs)
chr6 (161-224)||(33498652-33498716)
chr6 (187-226)||(34404600-34404639)
chr6 (188-226)||(10616512-10616550)
chr6 (186-224)||(32917256-32917294)
chr6 (177-214)||(10836864-10836901)
[»] chr2 (6 HSPs)
chr2 (186-218)||(11344749-11344781)
chr2 (183-247)||(29430814-29430878)
chr2 (160-226)||(1742003-1742070)
chr2 (193-247)||(22878164-22878218)
chr2 (181-214)||(9878665-9878698)
chr2 (183-224)||(15120239-15120280)
[»] chr8 (3 HSPs)
chr8 (162-213)||(37740411-37740462)
chr8 (160-212)||(25869251-25869304)
chr8 (177-214)||(30987974-30988011)
[»] chr5 (3 HSPs)
chr5 (158-244)||(10152364-10152451)
chr5 (186-224)||(32172712-32172750)
chr5 (186-224)||(38047852-38047890)
[»] chr7 (1 HSPs)
chr7 (161-213)||(39551532-39551585)


Alignment Details
Target: chr1 (Bit Score: 1008; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 1008; E-Value: 0
Query Start/End: Original strand, 12 - 1101
Target Start/End: Complemental strand, 30418367 - 30417280
Alignment:
Q  12 atcatatgagcttataagatgtaagctataagctatagattcaaaaatgtgtcttgccaaacggactctatgtataacttatttctgtaacaaatagata 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30418367 atcaaatgagcttataagatgtaagctataagctatagattcaaaaatgtgtcttgccaaacggactctatgtataacttatttctgtaacaaacagata 30418268  T
Q  112 aaatactcaaaattgttttcatgtaacaattagtagctatctttgaaatttatggaaaaaagctgaaataactaatggacatgtcataagttgtttccat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30418267 aaatactcaaaattgttttcatgtaacaattagtagctatctttgaaatttatggaaaaaagctgaaataacttatggacatgtcataagttgtttccat 30418168  T
Q  212 aaggtctaccaaatattcccactagtgcttatgtcacgatataaactcaaacataagttataactcaagcaggctgtataagtatttggaccatgcttgc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30418167 aaggtctaccaaatattcccactagtgcttatgtcacgatataaactcaaacataagttataacccaagcaggctgtataagtatttggaccatgcttgc 30418068  T
Q  312 atgctttaggacttcttgtatgttgggcttgtaacaaacgtttcaactccaacctggactgcacttagtgtgtgagattttaagctctgataattaatac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30418067 atgctttaggacttcttgtatgttgggcttgtaacaaacgtttcaactccaacctggactgcacttagtgtgtgagattttaagctctgataattaatac 30417968  T
Q  412 gttgggagaaatagctagtattttttgctgcactagtgcnnnnnnnctt-atcttgtttcccttgaccctgtttctattccttcttaatggaagttttta 510  Q
    |||||||||||||||||||||||||||||||||||||||        || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30417967 gttgggagaaatagctagtattttttgctgcactagtgctttttttttttatcttgtttcccttgaccctgtttctattccttcttaatggaagttttta 30417868  T
Q  511 cttatataatcttagttttgaggatatgttttgcttactgaatcttctatcatatgatttacctattactaatacctatgtaaagtgtaactcttccaaa 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30417867 cttatataatcttagttttgaggatatgttttgcttactgaatcttctatcatatgatttacctattactagtacctatgtaaagtgtaactcttccaaa 30417768  T
Q  611 agtagggtgattcttaagacaagaaggtcttttgcagcatgggtgaatgttagacctttgtatttactttgaactgattgtgttgtcctcactttttagg 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30417767 agtagggtgattcttaagacaagaaggtcttttgcagcatgggtgaatgttagacctttgtatttactttgaactgattatgttgtcctcactttttagg 30417668  T
Q  711 aacatttaaggcaaacattttggttttcggtaaattttatgagactaaatttgggaatcatgtttgtgttgtaatacacaaccccttgtgttctcttagc 810  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30417667 aacatttaagacaaacattttggttttcggtaaattttatgagactaaatttgggaatcatgtttgtgttgtaatacacaaccccttgtgttctcttagc 30417568  T
Q  811 cagaactatagattgatttcttttgaagtttgttttctttttgaacatgagccacacatgtatagtcaacctggtcataatgggctttggagccagcaag 910  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30417567 cagaactatagattgatttcttttaaagtttgttttctttttgaacatgagccacacatgtatagtcaacctggtcataatgggctttggagccagcaag 30417468  T
Q  911 agcttgatgatcataaaatatagtggcccacttcggagccttagatctcttgtagtagttttcttttgacatggcttttattttaccgatgtttcttcat 1010  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  30417467 agcttgatgatcataaaatatagtggcccacttcggagccttagatctcttg---tagttttcttttgacatggcttttattttaccgatgtttcttcat 30417371  T
Q  1011 gtaacttctctaagatttcgggttagtggaattaagaattgagcctaaaatttcaccttgacccctcctgctaacctgtgctgcctttgct 1101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30417370 gtaacttctctaagatttcgggttagtggaattaagaattgagcctaaaattgcaccttgacccctcctgctaacctgtgctgcctttgct 30417280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 15579514 - 15579579
Alignment:
Q  160 tttatggaaaaaagctga-aataactaatggacatgtcataagttgtttccataaggtctaccaaa 224  Q
    |||||||||| ||||||| || |||| ||||||||||||||||||||||||| ||| ||| |||||    
T  15579514 tttatggaaataagctgagaacaacttatggacatgtcataagttgtttccacaagctctcccaaa 15579579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 15437995 - 15438049
Alignment:
Q  160 tttatggaaaaaagctgaaa-taactaatggacatgtcataagttgtttccataa 213  Q
    |||| ||||| ||||||||| ||||| ||| ||||||||||||||||||||||||    
T  15437995 tttacggaaataagctgaaagtaacttatgaacatgtcataagttgtttccataa 15438049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 15581316 - 15581374
Alignment:
Q  189 gacatgtcataagttgtttccataaggtctaccaaatattcccactagtgcttatgtca 247  Q
    ||||||||||||||||||||||| || ||| ||||| | || ||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtca 15581374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 27145971 - 27146008
Alignment:
Q  177 aaataactaatggacatgtcataagttgtttccataag 214  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  27145971 aaataacttatggacatgtcataagctgtttccataag 27146008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 37273167 - 37273251
Alignment:
Q  161 ttatggaaaaaagctgaaat-aactaatggacatgtcataagttgtttccataaggtctaccaaatattcccactagtgcttatg 244  Q
    ||||||||| ||| |||||  |||| ||||||||||||||||||||||||||||| ||| ||||| | || ||| ||||||||||    
T  37273167 ttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatg 37273251  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 43115089 - 43115176
Alignment:
Q  161 ttatggaaaaaagctgaaat-aactaatggacatgtcataagttgtttccataaggtctaccaaatattcccactagtgcttatgtca 247  Q
    ||||||||| |||||||||  || | ||||||||||||||||||||||||||||  ||| ||||| | || ||| |||| ||||||||    
T  43115089 ttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtca 43115176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 41724266 - 41724299
Alignment:
Q  181 aactaatggacatgtcataagttgtttccataag 214  Q
    |||| |||||||||||||||||||||||||||||    
T  41724266 aacttatggacatgtcataagttgtttccataag 41724299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 12720 - 12683
Alignment:
Q  181 aactaatggacatgtcataagttgtttccataaggtct 218  Q
    |||| |||||||||||||||||||||||||||||||||    
T  12720 aacttatggacatgtcataagttgtttccataaggtct 12683  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 2874635 - 2874574
Alignment:
Q  186 atggacatgtcataagttgtttccataaggtctaccaaatattcccactagtgcttatgtca 247  Q
    ||||||||||||||||||||||||||||| |||||  || ||||| || |||| ||||||||    
T  2874635 atggacatgtcataagttgtttccataagttctacggaacattcctacaagtgtttatgtca 2874574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 2838297 - 2838350
Alignment:
Q  161 ttatggaaaaaagctgaaataactaatggacatgtcataagttgtttccataag 214  Q
    ||||||||| |||||||||||||| || ||||||||||||| |  |||||||||    
T  2838297 ttatggaaataagctgaaataacttattgacatgtcataagatacttccataag 2838350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 33498652 - 33498716
Alignment:
Q  161 ttatggaaaaaagctgaaa-taactaatggacatgtcataagttgtttccataaggtctaccaaa 224  Q
    ||||||||| ||||||||| ||||  || ||||||||||||||||||| |||||| |||||||||    
T  33498652 ttatggaaataagctgaaaataacctatagacatgtcataagttgttttcataagctctaccaaa 33498716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 34404600 - 34404639
Alignment:
Q  187 tggacatgtcataagttgtttccataaggtctaccaaata 226  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  34404600 tggacatgtcataagttgtttccataagctctcccaaata 34404639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 10616550 - 10616512
Alignment:
Q  188 ggacatgtcataagttgtttccataaggtctaccaaata 226  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  10616550 ggacatgtcataagttgtttccataagctctcccaaata 10616512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 32917256 - 32917294
Alignment:
Q  186 atggacatgtcataagttgtttccataaggtctaccaaa 224  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  32917256 atggacatgtcataagttgtttccataagctctcccaaa 32917294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 10836864 - 10836901
Alignment:
Q  177 aaataactaatggacatgtcataagttgtttccataag 214  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  10836864 aaatagctaatggacatgtcagaagttgtttccataag 10836901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 11344781 - 11344749
Alignment:
Q  186 atggacatgtcataagttgtttccataaggtct 218  Q
    |||||||||||||||||||||||||||||||||    
T  11344781 atggacatgtcataagttgtttccataaggtct 11344749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 29430814 - 29430878
Alignment:
Q  183 ctaatggacatgtcataagttgtttccataaggtctaccaaatattcccactagtgcttatgtca 247  Q
    ||||||||||||||||||| | ||| |||||| ||| ||||||| |||||| |||| ||||||||    
T  29430814 ctaatggacatgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtca 29430878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 1742070 - 1742003
Alignment:
Q  160 tttatggaaaaaagctgaa-ataactaatggacatgtcataagttgtttccataaggtctaccaaata 226  Q
    |||||||||| ||| |||| ||| || ||| ||||||||||||||||||||||||| ||| |||||||    
T  1742070 tttatggaaataagttgaagatagcttatgcacatgtcataagttgtttccataagctctcccaaata 1742003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 22878164 - 22878218
Alignment:
Q  193 tgtcataagttgtttccataaggtctaccaaatattcccactagtgcttatgtca 247  Q
    |||||||| ||||||||||||||||| ||||| | || ||| |||||||||||||    
T  22878164 tgtcataatttgtttccataaggtctcccaaacagtctcacaagtgcttatgtca 22878218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 9878698 - 9878665
Alignment:
Q  181 aactaatggacatgtcataagttgtttccataag 214  Q
    |||| |||||||||||||||||||||||||||||    
T  9878698 aacttatggacatgtcataagttgtttccataag 9878665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 15120239 - 15120280
Alignment:
Q  183 ctaatggacatgtcataagttgtttccataaggtctaccaaa 224  Q
    |||||| ||||||||||||||||||||||||| ||| |||||    
T  15120239 ctaatgaacatgtcataagttgtttccataagctctcccaaa 15120280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 37740462 - 37740411
Alignment:
Q  162 tatggaaaaaagctgaaataactaatggacatgtcataagttgtttccataa 213  Q
    |||||||| |||||||||  | | ||||||||||||||||||||||||||||    
T  37740462 tatggaaataagctgaaaatagttatggacatgtcataagttgtttccataa 37740411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 25869304 - 25869251
Alignment:
Q  160 tttatggaaaaaagctgaaat-aactaatggacatgtcataagttgtttccata 212  Q
    |||||||||| |||||||||  |||| |||||||||||||||||| ||||||||    
T  25869304 tttatggaaataagctgaaaacaacttatggacatgtcataagttatttccata 25869251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 30988011 - 30987974
Alignment:
Q  177 aaataactaatggacatgtcataagttgtttccataag 214  Q
    ||||| || |||||||||||||||||||||||||||||    
T  30988011 aaatagcttatggacatgtcataagttgtttccataag 30987974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 10152364 - 10152451
Alignment:
Q  158 aatttatggaaa-aaagctgaaataactaatggacatgtcataagttgtttccataaggtctaccaaatattcccactagtgcttatg 244  Q
    ||||||| |||| ||||| |||| |||| |||||||||||||||||||||| |||||| ||| | ||||| || |||  |||||||||    
T  10152364 aatttattgaaataaagcggaaaaaacttatggacatgtcataagttgttttcataagctctccaaaatagtctcacatgtgcttatg 10152451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 32172712 - 32172750
Alignment:
Q  186 atggacatgtcataagttgtttccataaggtctaccaaa 224  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  32172712 atggacatgtcataagttgtttccataagctctcccaaa 32172750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 38047890 - 38047852
Alignment:
Q  186 atggacatgtcataagttgtttccataaggtctaccaaa 224  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  38047890 atggacatgtcataagttgtttccataagctctcccaaa 38047852  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 39551585 - 39551532
Alignment:
Q  161 ttatggaaaaaagctga-aataactaatggacatgtcataagttgtttccataa 213  Q
    ||||||||| ||||||| || | || ||||||||||||||||||||||||||||    
T  39551585 ttatggaaataagctgacaacaccttatggacatgtcataagttgtttccataa 39551532  T

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