View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2240_high_10 (Length: 499)

Name: NF2240_high_10
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2240_high_10
NF2240_high_10
[»] chr8 (3 HSPs)
chr8 (20-320)||(3586784-3587084)
chr8 (390-489)||(3587156-3587255)
chr8 (131-177)||(3574501-3574547)
[»] chr7 (2 HSPs)
chr7 (383-434)||(28195375-28195426)
chr7 (109-163)||(21979083-21979138)
[»] chr1 (1 HSPs)
chr1 (399-441)||(35812111-35812153)
[»] chr2 (1 HSPs)
chr2 (386-445)||(2703106-2703166)
[»] chr3 (2 HSPs)
chr3 (399-441)||(28145037-28145079)
chr3 (119-162)||(28080376-28080420)


Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 3586784 - 3587084
Alignment:
Q  20 gttccagcaaagtttcactacatgtagttgaagtttcaagttcaaatttcaagtgttatcttctggagcgtgaagatggaggttatatgcggtacttttg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3586784 gttccagcaaagtttcactacatgtagttgaagtttcaagttcaaatttcaagtgttatcttctggagcgtgaagatggaggttatatacggtacttttg 3586883  T
Q  120 gtactccatttttattcattttctattgtgagtgaaaattgtgggttctcttgtatatggtcaccgaaagggccggcaccactaataaggtcagtacttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3586884 gtactccatttttattcattttctattgtgagtgaaaattgtgggttctcttgtaaatggtcaccgaaagggccggcaccactaataaggtcagtacttt 3586983  T
Q  220 tcgagctgctgcccatgatgctgctaatgtgcttgaacttcctcctgatgtggttgacatagtttcacgtttggcccatacagtgttacacgagcatatg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  3586984 tcgagctgctgcccatgatgctgctaatgtgcttgaacttcctcctgatgtggttgacatagtttcacgtttggcccgtatagtgttacacgagcatatg 3587083  T
Q  320 a 320  Q
    |    
T  3587084 a 3587084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 3587156 - 3587255
Alignment:
Q  390 aaaatttagctctcatgttatattatataacaaaattcatgatttcattgacatatttatatattaannnnnnnaaaattgttgtattctcgtacctttg 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||    
T  3587156 aaaatttagctctcatgttatattatataacaaaattcatgatttcattgacgtatttatatattaatttttataaaattgttgtattctcgtacctttg 3587255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 3574501 - 3574547
Alignment:
Q  131 ttattcattttctattgtgagtgaaaattgtgggttctcttgtatat 177  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  3574501 ttattcattttttattgtgagtgaaaatcgtgggttctcttgtatat 3574547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 434
Target Start/End: Original strand, 28195375 - 28195426
Alignment:
Q  383 aagttgaaaaatttagctctcatgttatattatataacaaaattcatgattt 434  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  28195375 aagttgaagaatttaggtctcatgttatattatataacaaaactcatgattt 28195426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 21979138 - 21979083
Alignment:
Q  109 cggtacttttggtactccatttttattcatt-ttctattgtgagtgaaaattgtgg 163  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||| ||| |||||    
T  21979138 cggtacttttggtactccatttttgctcattattctattgtgagtggaaaatgtgg 21979083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 35812153 - 35812111
Alignment:
Q  399 ctctcatgttatattatataacaaaattcatgatttcattgac 441  Q
    |||||||||||||||||||||||||| ||||||||| ||||||    
T  35812153 ctctcatgttatattatataacaaaactcatgattttattgac 35812111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 2703166 - 2703106
Alignment:
Q  386 ttgaaaaatttagct-ctcatgttatattatataacaaaattcatgatttcattgacatat 445  Q
    ||||| ||||||||| ||||||||| |||||||||||||| || |||||| ||||||||||    
T  2703166 ttgaataatttagcttctcatgttacattatataacaaaagtcgtgattttattgacatat 2703106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 441
Target Start/End: Original strand, 28145037 - 28145079
Alignment:
Q  399 ctctcatgttatattatataacaaaattcatgatttcattgac 441  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||    
T  28145037 ctctcatgttatattatatagcaaaactcatgattttattgac 28145079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 28080376 - 28080420
Alignment:
Q  119 ggtactccatttttattcatt-ttctattgtgagtgaaaattgtg 162  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||    
T  28080376 ggtacttcatttttgttcattattctattgtgagtgaaaattgtg 28080420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University