View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2240_high_14 (Length: 440)

Name: NF2240_high_14
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2240_high_14
NF2240_high_14
[»] chr7 (7 HSPs)
chr7 (1-422)||(46121453-46121876)
chr7 (159-196)||(835093-835130)
chr7 (159-196)||(1200273-1200310)
chr7 (159-195)||(47879759-47879795)
chr7 (159-195)||(47914837-47914873)
chr7 (160-195)||(40098533-40098568)
chr7 (159-195)||(43392028-43392064)
[»] chr3 (4 HSPs)
chr3 (159-198)||(46174788-46174827)
chr3 (58-108)||(6976140-6976190)
chr3 (159-195)||(44761621-44761657)
chr3 (163-195)||(45135759-45135791)
[»] chr4 (5 HSPs)
chr4 (159-195)||(7007926-7007962)
chr4 (58-107)||(9163620-9163669)
chr4 (159-195)||(9163737-9163773)
chr4 (159-195)||(28542123-28542159)
chr4 (159-195)||(41321327-41321363)
[»] chr2 (6 HSPs)
chr2 (160-195)||(34027520-34027555)
chr2 (159-195)||(9120750-9120786)
chr2 (159-195)||(12408004-12408040)
chr2 (159-195)||(12420064-12420100)
chr2 (159-195)||(20605559-20605595)
chr2 (159-195)||(32125905-32125941)
[»] chr1 (6 HSPs)
chr1 (53-108)||(28337359-28337414)
chr1 (162-195)||(47781317-47781350)
chr1 (161-189)||(27873935-27873963)
chr1 (159-195)||(32588246-32588282)
chr1 (159-195)||(48525140-48525176)
chr1 (159-195)||(49197764-49197800)
[»] chr8 (3 HSPs)
chr8 (159-195)||(13477818-13477854)
chr8 (159-195)||(32711131-32711167)
chr8 (159-195)||(42734818-42734854)
[»] chr5 (3 HSPs)
chr5 (159-195)||(4771770-4771806)
chr5 (159-195)||(7016269-7016305)
chr5 (159-187)||(43319620-43319648)


Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 46121876 - 46121453
Alignment:
Q  1 tgagaatgttaaacttcatagacctttcaaatctta--aatccacaaaatcaagttctataaaatcttatgatatgaatcctttaaaatccaaattgtaa 98  Q
    ||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46121876 tgagaatgttaaacttcatagacctctgaaatcttataaatccacaaaatcaagttctttaaaatcttatgatatgaatcctttaaaatccaaattgtaa 46121777  T
Q  99 atattgatagattttttaaaatgtcattaaaatcttttaaaatcaacaatacnnnnnnncaacaaaaattatcttttaaaatcctaatcaaatacactcc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||| ||||||||||    
T  46121776 atattgatagattttttaaaatgtcattaaaatcttttaaaatccacaatactttttttcaacaaaaattatcttttaaaatcctaatccaatacactcc 46121677  T
Q  199 gaaaaagttacattgataattgtacaaattcttgtagtgaaacttttgatcaacaataaattctatagaatattcatttgatacaaaaatatcgatcaat 298  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46121676 gaaaaagttacattaataattgtacaaattcctgtagtgaaacttttgatcaacaataaattctatagaatattcatttgatacaaaaatatcgatcaat 46121577  T
Q  299 annnnnnnctttgcaacaatatattttattctatgaacagtatattttacaagcaactatgtattattgtgatgtattttatctgaaaatcagattaagc 398  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46121576 atttttttctttgcaacaatatattttattctatgaacagtatattttacaagcaactatgtattattgtgatgtattttatctgaaaatcagattaagc 46121477  T
Q  399 tgaccattcaccaacaaatccaac 422  Q
    ||||||||||||||||||||||||    
T  46121476 tgaccattcaccaacaaatccaac 46121453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 835093 - 835130
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacact 196  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  835093 aacaaaaattatcttttaaaatcctaatccaatacact 835130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 1200273 - 1200310
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacact 196  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  1200273 aacaaaaattatcttttaaaatcctaatccaatacact 1200310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 47879759 - 47879795
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||||||||||||||||||| |||||||    
T  47879759 aacaaaaattatcttttaaaatcctaatccaatacac 47879795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 47914837 - 47914873
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||||||||||||||||||| |||||||    
T  47914837 aacaaaaattatcttttaaaatcctaatccaatacac 47914873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 40098533 - 40098568
Alignment:
Q  160 acaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    |||||||| |||||||||||||||||||||||||||    
T  40098533 acaaaaataatcttttaaaatcctaatcaaatacac 40098568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 43392064 - 43392028
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  43392064 aacaaaaattatcctttaaaatcctaatccaatacac 43392028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 46174788 - 46174827
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacactcc 198  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  46174788 aacaaaaattatcttttaaaatcctaatcgaatacactcc 46174827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 6976140 - 6976190
Alignment:
Q  58 taaaatcttatgatatgaatcctttaaaatccaaattgtaaatattgatag 108  Q
    |||||||||||||| | ||||| || ||||||||||||||||| |||||||    
T  6976140 taaaatcttatgatgtaaatccattgaaatccaaattgtaaatcttgatag 6976190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 44761657 - 44761621
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  44761657 aacaaaaattatcctttaaaatcctaatccaatacac 44761621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 45135759 - 45135791
Alignment:
Q  163 aaaattatcttttaaaatcctaatcaaatacac 195  Q
    |||||| ||||||||||||||||||||||||||    
T  45135759 aaaattgtcttttaaaatcctaatcaaatacac 45135791  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 7007926 - 7007962
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||||||||||||||||||| |||||||    
T  7007926 aacaaaaattatcttttaaaatcctaatccaatacac 7007962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 9163620 - 9163669
Alignment:
Q  58 taaaatcttatgatatgaatcctttaaaatccaaattgtaaatattgata 107  Q
    |||||||||||| ||| ||||| || ||||||||||||||||| ||||||    
T  9163620 taaaatcttatggtataaatccattgaaatccaaattgtaaatcttgata 9163669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 9163737 - 9163773
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  9163737 aacaaaaattatcttttaaaatcataatccaatacac 9163773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 28542123 - 28542159
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  28542123 aacaaaaattatcctttaaaatcctaatccaatacac 28542159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 41321327 - 41321363
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  41321327 aacaaaaatcatcttttaaaatcctaatccaatacac 41321363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 34027555 - 34027520
Alignment:
Q  160 acaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    |||||||| |||||||||||||||||||||||||||    
T  34027555 acaaaaataatcttttaaaatcctaatcaaatacac 34027520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 9120750 - 9120786
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  9120750 aacaaaaattatcctttaaaatcctaatctaatacac 9120786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 12408004 - 12408040
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  12408004 aacaaaaattatcctttaaaatcctaatccaatacac 12408040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 12420064 - 12420100
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  12420064 aacaaaaattatcctttaaaatcctaatccaatacac 12420100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 20605559 - 20605595
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  20605559 aacaaaaattatcctttaaaatcctaatccaatacac 20605595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 32125905 - 32125941
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  32125905 aacaaaaattatcctttaaaatcctaatccaatacac 32125941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 28337414 - 28337359
Alignment:
Q  53 ttctataaaatcttatgatatgaatcctttaaaatccaaattgtaaatattgatag 108  Q
    ||||||||||||||||||||| |||| ||| |||| |||||| ||||| |||||||    
T  28337414 ttctataaaatcttatgatataaatcatttcaaattcaaattttaaatcttgatag 28337359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 47781317 - 47781350
Alignment:
Q  162 aaaaattatcttttaaaatcctaatcaaatacac 195  Q
    |||||||||||||||||||||||||| |||||||    
T  47781317 aaaaattatcttttaaaatcctaatccaatacac 47781350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 27873963 - 27873935
Alignment:
Q  161 caaaaattatcttttaaaatcctaatcaa 189  Q
    |||||||||||||||||||||||||||||    
T  27873963 caaaaattatcttttaaaatcctaatcaa 27873935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 32588282 - 32588246
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  32588282 aacaaaaattatcttttaagatcctaatccaatacac 32588246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 48525140 - 48525176
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  48525140 aacaaaaattatcctttaaaatcctaatccaatacac 48525176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 49197800 - 49197764
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    |||||||||| |||||||||||||||||| |||||||    
T  49197800 aacaaaaattgtcttttaaaatcctaatccaatacac 49197764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 13477854 - 13477818
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  13477854 aacaaaaattatcctttaaaatcctaatccaatacac 13477818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 32711167 - 32711131
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  32711167 aacaaaaattatcctttaaaatcctaatccaatacac 32711131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 42734854 - 42734818
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  42734854 aacaaaaattatcctttaaaatcctaatccaatacac 42734818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 4771806 - 4771770
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    |||||||||| || |||||||||||||||||||||||    
T  4771806 aacaaaaattgtcctttaaaatcctaatcaaatacac 4771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 7016305 - 7016269
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatcaaatacac 195  Q
    |||||||||| || |||||||||||||||||||||||    
T  7016305 aacaaaaattgtcctttaaaatcctaatcaaatacac 7016269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 43319620 - 43319648
Alignment:
Q  159 aacaaaaattatcttttaaaatcctaatc 187  Q
    |||||||||||||||||||||||||||||    
T  43319620 aacaaaaattatcttttaaaatcctaatc 43319648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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