View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2240_high_15 (Length: 434)
Name: NF2240_high_15
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_high_15 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
| [»] scaffold1064 (1 HSPs) |
| | |
|
| [»] scaffold0888 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 3461306 - 3461663
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
3461306 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagaagagtacataactggtacttttgctacttgtcaa |
3461405 |
T |
|
| Q |
110 |
gcactacggctggattcagtgatgaaggtatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaaga |
209 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3461406 |
gcactatggttggattcagtgatgaaggaatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagccataagtcttgtaaaga |
3461505 |
T |
|
| Q |
210 |
atccaatctcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccac |
309 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3461506 |
atccaatcttacatggcaggagtaaacacattgagaccatattccattttattagagagcatgtgactaatggaatgattgagctgcactattgccccac |
3461605 |
T |
|
| Q |
310 |
agaactgcaacttgctgatggttttacaaaggcagtaaagcttaacatatttgaattc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3461606 |
agaactgcaacttgctgatggttttacaaaggcagtaaagcttgacatatttgaattc |
3461663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 301859 - 302216
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaa |
109 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||| |||||||||||| || | |||||| || | || || ||||| ||||||||| |
|
|
| T |
301859 |
caatgatgctgcaatctcttggtgcaccaagaagcaaccagtcaatgcactctcatccaatggtgcagagtacattgcaggaacatttgctacttgtcaa |
301958 |
T |
|
| Q |
110 |
gcactacggctggattcagtgatgaaggtatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaaga |
209 |
Q |
| |
|
||| || ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| || ||||||| || |||||||| ||||| |
|
|
| T |
301959 |
gcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaattgacaacaaatcagccacaagtcttgcaaaga |
302058 |
T |
|
| Q |
210 |
atccaatctcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccac |
309 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
302059 |
atctaatctcacatggcaggagtaaacacattgagaccagattcaatttcatttgagagcaggtgactaatggaatgattgagctgcactactgccccac |
302158 |
T |
|
| Q |
310 |
agaactgcaacttgctgatggttttacaaaggcagtaaagcttaacatatttgaattc |
367 |
Q |
| |
|
| |||| ||||||||||||||||||||||| ||| | |||||| ||| |||||||||| |
|
|
| T |
302159 |
aaaactacaacttgctgatggttttacaaaagcaatgaagcttgacagatttgaattc |
302216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 367
Target Start/End: Complemental strand, 39190997 - 39190903
Alignment:
| Q |
273 |
tgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttacaaaggcagtaaagcttaacatatttgaattc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||| |||||||||| |
|
|
| T |
39190997 |
tgactaatggaatgattgagctgcactactgccccacagaactgcaacttgctgatggttttgcaaaagcagtgaagcttgacagatttgaattc |
39190903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 118 - 366
Target Start/End: Complemental strand, 38099664 - 38099416
Alignment:
| Q |
118 |
gctggattcagtgatgaaggtatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaagaatccaatc |
217 |
Q |
| |
|
|||||||||| ||||||| | | ||||||||||||||||| |||||||||||||| ||||| || |||||| ||||||||||| | |||||| || |
|
|
| T |
38099664 |
gctggattcaatgatgaaagagctcaagtgtgaagtgatgaaacctctaacactgaagattgacaacaaatcaaccataagtcttgctaggaatcctatt |
38099565 |
T |
|
| Q |
218 |
tcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccacagaactgc |
317 |
Q |
| |
|
|| ||||| || | |||||||||||||| | ||||||||||||||| |||| ||||||||||| |||||||| || || ||||| || |||||| || |
|
|
| T |
38099564 |
tctcatggtagaatcaaacacattgagactagattccatttcattagggagcgagtgactaatggtatgattgaactacaatattgtcctacagaattgt |
38099465 |
T |
|
| Q |
318 |
aacttgctgatggttttacaaaggcagtaaagcttaacatatttgaatt |
366 |
Q |
| |
|
| || || |||| ||||||||||| | |||||| |||||||||||| |
|
|
| T |
38099464 |
agctagcatatggctttacaaaggctttgaagcttggcatatttgaatt |
38099416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 12370949 - 12370995
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactg |
56 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12370949 |
caatggtgctgcaatctcatggtgcacaaagaaacaaccagtcactg |
12370995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 3465563 - 3465608
Alignment:
| Q |
379 |
ttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3465563 |
ttcactctatatgtttttagcaatattgatcatgttattgtctctg |
3465608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 10237098 - 10237043
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| || ||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
10237098 |
tgttcgcagattcaccctatacgtttttagcgatattgatcatgttattgtctctg |
10237043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 3309173 - 3309218
Alignment:
| Q |
379 |
ttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
3309173 |
ttcaccctatacgtttttagcgatattgatcatgttattgtctctg |
3309218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 3460509 - 3460559
Alignment:
| Q |
374 |
gtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||| |||||| |||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
3460509 |
gtagattcaccttatacgtttttagcgatattgatcatgttattgtctctg |
3460559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 37787236 - 37786879
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaa |
109 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||||||||| |||| | ||||||||| | ||||| |||||| || | || || ||||| ||||||||| |
|
|
| T |
37787236 |
caatgatgctgcaatctcctagtgcaccaagaagcaaccaatcacaggactctcatcttatgaagcagagtacattgcaggaacatttgctacttgtcaa |
37787137 |
T |
|
| Q |
110 |
gcactacggctggattcagtgatgaaggtatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaaga |
209 |
Q |
| |
|
||| || ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||| |
|
|
| T |
37787136 |
gcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaattgacaacaaatcagccataagtcttgcaaaga |
37787037 |
T |
|
| Q |
210 |
atccaatctcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccac |
309 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37787036 |
atccaatctcacatggcagaagtaaacacattgagaccatattccatttcattagagagcaagtgactaatggaatgattgagctgcactactgccccac |
37786937 |
T |
|
| Q |
310 |
agaactgcaacttgctgatggttttacaaaggcagtaaagcttaacatatttgaattc |
367 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||| ||| |||||||||| |
|
|
| T |
37786936 |
agaactacaacttgctgatggttttacaaaagcagtgaagcttgacagatttgaattc |
37786879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 342
Target Start/End: Original strand, 6414319 - 6414455
Alignment:
| Q |
206 |
aagaatccaatctcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgcc |
305 |
Q |
| |
|
|||||||| ||||| |||||| | || |||||||||| ||| | |||| |||||||||| ||||| |||||||||||| |||||||| |||| || || | |
|
|
| T |
6414319 |
aagaatcccatctctcatggcggaagcaaacacattgggactagattctatttcattagggagcaggtgactaatggagtgattgagttgcattactgtc |
6414418 |
T |
|
| Q |
306 |
ccacagaactgcaacttgctgatggttttacaaaggc |
342 |
Q |
| |
|
| |||||| |||| ||||| ||||||||||||||||| |
|
|
| T |
6414419 |
ctacagaattgcagcttgcagatggttttacaaaggc |
6414455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 41896727 - 41896776
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattg |
418 |
Q |
| |
|
|||||| || ||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
41896727 |
tgttcgcagattcaccctatacgtttttagcaatattgatcatgttattg |
41896776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 14585887 - 14585942
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| || ||||||||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
14585887 |
tgttcgcagattcaccctatacgtttttagcgatattgatcatgttattatctctg |
14585942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Original strand, 42046431 - 42046482
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtc |
420 |
Q |
| |
|
|||||| || ||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
42046431 |
tgttcgcagattcaccctatacgtttttagcgatattgatcatgttattgtc |
42046482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 151 - 366
Target Start/End: Complemental strand, 50778598 - 50778383
Alignment:
| Q |
151 |
agtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaagaatccaatctcacatggcaggagtaaacacattgagaccata |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50778598 |
agtgatgaagcctctaacactgaaaattgataataaatcagccataagtcttgcaaagaatccaatctcacatggcaggagtaaacacattgagaccaga |
50778499 |
T |
|
| Q |
251 |
ttccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttacaaaggcagtaaagc |
350 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50778498 |
ttccatttcattagagagcaggtgactaattgaatgattgagctgcactattgccccacagaactgcaacttgctgatggctttacaaaggcagtaaagc |
50778399 |
T |
|
| Q |
351 |
ttaacatatttgaatt |
366 |
Q |
| |
|
|| ||| ||||||||| |
|
|
| T |
50778398 |
ttgacagatttgaatt |
50778383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 44536544 - 44536488
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatc |
66 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
44536544 |
caatgatgctgcaatctcctggtgcaccaagaagcaaccaatcactgcgctctcatc |
44536488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 50778649 - 50778589
Alignment:
| Q |
76 |
agagtatataactggtacttttgccacttgtcaagcactacggctggattcagtgatgaag |
136 |
Q |
| |
|
|||||| ||| |||| |||||||| ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
50778649 |
agagtacatagctggaacttttgctacttgtcaagcactatggctgaattcagtgatgaag |
50778589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 36775591 - 36775536
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| || ||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
36775591 |
tgttcgcagattcaccctatacgtttttagcgatattgatcatgttattgtctctg |
36775536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 48750406 - 48750451
Alignment:
| Q |
379 |
ttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
48750406 |
ttcaccctatacgtttttagcgatattgatcatgttattgtctctg |
48750451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 419
Target Start/End: Complemental strand, 34412973 - 34412923
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgt |
419 |
Q |
| |
|
|||||| || ||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
34412973 |
tgttcgcagattcaccctatacgtttttagcgatattgatcatgttattgt |
34412923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 48843 - 49200
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaa |
109 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||||| ||| |||| |||||||| ||||| ||| |
|
|
| T |
48843 |
caatgatgctgcaatttcatggtgcaccaagaagcaaccagtcactgcactttcatcctgtgaagcagagtacatagctggaacttttgctacttgccaa |
48942 |
T |
|
| Q |
110 |
gcactacggctggattcagtgatgaaggtatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaaga |
209 |
Q |
| |
|
|| || ||||||||| ||||||||| | | |||||||||||| | |||||||| |||||||| ||||| || ||||||| ||||||||||| |||| |
|
|
| T |
48943 |
acattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactgaagattgacaacaaatcaggcataagtcttgctaaga |
49042 |
T |
|
| Q |
210 |
atccaatctcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccac |
309 |
Q |
| |
|
|| |||| |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
49043 |
atattgtctctcatggcagaagtaaacacatttcgaccagattccatttcattagagagcatgtgactaatggaatgattgagttgcactactgccccac |
49142 |
T |
|
| Q |
310 |
agaactgcaacttgctgatggttttacaaaggcagtaaagcttaacatatttgaattc |
367 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||| ||| |||||||||| |
|
|
| T |
49143 |
agaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaattc |
49200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 28248681 - 28249038
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaa |
109 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||||| ||| |||| |||||||| ||||| ||| |
|
|
| T |
28248681 |
caatgatgctgcaatttcatggtgcaccaagaagcaaccagtcactgcactttcatcctgtgaagcagagtacatagctggaacttttgctacttgccaa |
28248780 |
T |
|
| Q |
110 |
gcactacggctggattcagtgatgaaggtatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaaga |
209 |
Q |
| |
|
|| || ||||||||| ||||||||| | | |||||||||||| | |||||||| |||||||| ||||| || ||||||| ||||||||||| |||| |
|
|
| T |
28248781 |
acattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactgaagattgacaacaaatcaggcataagtcttgctaaga |
28248880 |
T |
|
| Q |
210 |
atccaatctcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccac |
309 |
Q |
| |
|
|| |||| |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
28248881 |
atattgtctctcatggcagaagtaaacacatttcgaccagattccatttcattagagagcatgtgactaatggaatgattgagttgcactactgccccac |
28248980 |
T |
|
| Q |
310 |
agaactgcaacttgctgatggttttacaaaggcagtaaagcttaacatatttgaattc |
367 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||| ||| |||||||||| |
|
|
| T |
28248981 |
agaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaattc |
28249038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 29011122 - 29011063
Alignment:
| Q |
277 |
taatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttac |
336 |
Q |
| |
|
|||||||||| |||||||||| | ||| || ||||||||||||||||| |||||||||| |
|
|
| T |
29011122 |
taatggaatggttgagctgcagttttgtcctacagaactgcaacttgcatatggttttac |
29011063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 30776872 - 30776927
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| || |||||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
30776872 |
tgttcgcagattcaccctttacgtttttagcgatattgatcatgttattgtctctg |
30776927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 296594 - 296951
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaa |
109 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||| |||| ||||||||||| | ||||| ||||| || | || || ||||| |||| |||| |
|
|
| T |
296594 |
caatgatgctgcaatctcctggtgcaccaagaagcaaccaatcaccgcactctcatcctatgaagctgagtacattgcaggaacatttgctacttttcaa |
296693 |
T |
|
| Q |
110 |
gcactacggctggattcagtgatgaaggtatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaaga |
209 |
Q |
| |
|
|||||| |||||||||||||||| || | | ||||||||||||||||||||||| |||||||| ||||| || ||||||| ||||||||||| |||| |
|
|
| T |
296694 |
gcactatggctggattcagtgataaaagagctcaagtgtgaagtgatgaagcctctgacactgaagattgacaacaaatcagccataagtcttgctaaga |
296793 |
T |
|
| Q |
210 |
atccaatctcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccac |
309 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
296794 |
atcccgtctctcatggcaaaagtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccac |
296893 |
T |
|
| Q |
310 |
agaactgcaacttgctgatggttttacaaaggcagtaaagcttaacatatttgaattc |
367 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||| |||||| ||| |||||||||| |
|
|
| T |
296894 |
agaactacaacttgttgatggttttacaaaagcagcgaagcttgacacatttgaattc |
296951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 30380174 - 30380528
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaa |
109 |
Q |
| |
|
|||||||||||||||||| ||||| || || ||||||| ||||||||||||| |||||||||||| || || || || |||||||| ||||||||| |
|
|
| T |
30380174 |
caatgatgctgcaatctcctggtgtaccaa-aagcaactagtcactgcactcgcatcatgtgaagttgaatacattgaaggaacttttgctacttgtcaa |
30380272 |
T |
|
| Q |
110 |
gcactacggctggattcagtgatgaaggtatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaaga |
209 |
Q |
| |
|
|| ||| | |||||||||||||||| | | ||||||||||||||||| |||||||||||| | ||||| || ||||||| ||||||||||| ||| |
|
|
| T |
30380273 |
gctctatgattggattcagtgatgaaagagctcaagtgtgaagtgatgaaacctctaacactggagattgacaacaaatcagccataagtcttgcttaga |
30380372 |
T |
|
| Q |
210 |
atccaatctcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccac |
309 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| | | || |
|
|
| T |
30380373 |
atccaatctcacatggcaaaagtaaacacattgagaccagattccatttcattagagagcaggtgactaatggaatgattgagctacactactatacaac |
30380472 |
T |
|
| Q |
310 |
agaactgcaacttgctgatggttttacaaaggcagtaaagcttaacatatttgaatt |
366 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||| |||||| |||||||| |||| |
|
|
| T |
30380473 |
agaactgcaacttgcatatgg-tttacaaaagcagtgaagcttgacatattttaatt |
30380528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 205 - 367
Target Start/End: Original strand, 35898325 - 35898487
Alignment:
| Q |
205 |
aaagaatccaatctcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgc |
304 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35898325 |
aaagaatccaatatcacatggcaggagtaaacacattgagaccagattccatttcattagagagcaggtgactaatggaatgattgagctgcactattgc |
35898424 |
T |
|
| Q |
305 |
cccacagaactgcaacttgctgatggttttacaaaggcagtaaagcttaacatatttgaattc |
367 |
Q |
| |
|
|||| ||||||||||||||| |||| |||| ||||||||| ||| || ||| |||||||||| |
|
|
| T |
35898425 |
tccacggaactgcaacttgcttatggctttaaaaaggcagtgaagtttgacagatttgaattc |
35898487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 35898178 - 35898304
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |||||| | ||||||||| |
|
|
| T |
35898178 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagcagagtacatagctggaactttttctacttgtcaa |
35898277 |
T |
|
| Q |
110 |
gcactacggctggattcagtgatgaag |
136 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
35898278 |
gcactatggctggattcagtgatgaag |
35898304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 5243334 - 5243396
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga |
72 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||||||||| ||| || ||||||||||| |
|
|
| T |
5243334 |
caatgatgatgcaatctcatggtgtactaagaagcaaccagtcaatgctctatcatcatgtga |
5243396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 35133157 - 35133212
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| || ||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
35133157 |
tgttcgcagattcaccctatacgtttttaacgatattgatcatgttattgtctctg |
35133212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 48930917 - 48930972
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| || |||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
48930917 |
tgttcgcagattcaacctatacgtttttagcgatattgatcatgttattgtctctg |
48930972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 35898295 - 35898323
Alignment:
| Q |
151 |
agtgatgaagcctctaacactgaaaattg |
179 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35898295 |
agtgatgaagcctctaacactgaaaattg |
35898323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 48 - 366
Target Start/End: Original strand, 5706728 - 5707046
Alignment:
| Q |
48 |
cagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaagcactacggctggattcagtgatgaaggtatttaagtg |
147 |
Q |
| |
|
|||||||| |||| ||||| ||||||| ||||| || || || || ||||| |||||||||||| || ||||||||||||||||||| | | ||||| |
|
|
| T |
5706728 |
cagtcactacactatcatcctgtgaagttgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtg |
5706827 |
T |
|
| Q |
148 |
tgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaagaatccaatctcacatggcaggagtaaacacattgagacc |
247 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||| || |||||| ||||||||||| |||| ||| |||| |||||||| ||||||||| | |||||| |
|
|
| T |
5706828 |
tgaagtgataaagcctctgacactgaagattgacaacaaatcatccataagtcttgctaagagtcctgtctctcatggcagaagtaaacacttagagacc |
5706927 |
T |
|
| Q |
248 |
atattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttacaaaggcagtaa |
347 |
Q |
| |
|
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||| | |
|
|
| T |
5706928 |
agattccatttcattagggagcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatgcagtga |
5707027 |
T |
|
| Q |
348 |
agcttaacatatttgaatt |
366 |
Q |
| |
|
||||| ||| ||||||||| |
|
|
| T |
5707028 |
agcttgacaaatttgaatt |
5707046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 141 - 366
Target Start/End: Complemental strand, 9238586 - 9238360
Alignment:
| Q |
141 |
ttaagtgtgaagtgatgaagcctct-aacactgaaaattgataataaatcagtcataagtcttgtaaagaatccaatctcacatggcaggagtaaacaca |
239 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||| || || |||| |||||||||||| |||||||| ||||| ||||| || || ||||| | |
|
|
| T |
9238586 |
ttaagtgtgaagtgatgaagcctcttaacactgagaattgacaacaagtcagccataagtcttgtcaagaatcccatctctcatggtagaagcaaacata |
9238487 |
T |
|
| Q |
240 |
ttgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttacaaa |
339 |
Q |
| |
|
||||||| | ||| | ||||||| | |||| ||||||||||| ||||||||| |||| ||||| || ||| || |||| ||||| ||||| |||||||| |
|
|
| T |
9238486 |
ttgagactagatttcgtttcatttggaagcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaa |
9238387 |
T |
|
| Q |
340 |
ggcagtaaagcttaacatatttgaatt |
366 |
Q |
| |
|
| | | |||||| ||||||||||||| |
|
|
| T |
9238386 |
gactttgaagcttgacatatttgaatt |
9238360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 348
Target Start/End: Original strand, 9880992 - 9881148
Alignment:
| Q |
193 |
cataagtcttgtaaagaatccaatctcacatggcaggagtaaacacattgagaccata-ttccatttcattagagagcatgtgactaatggaatgattga |
291 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| || || || ||||| ||||| | | |||||||| ||||| ||||| ||||||||||||||| ||| |
|
|
| T |
9880992 |
cataagtcttgctaagaatcccatctcacatggtagaagcaagcacatagagactaaaattccattttattagggagcagatgactaatggaatgaatga |
9881091 |
T |
|
| Q |
292 |
gctgcactattgccccacagaactgcaacttgctgatggttttacaaaggcagtaaa |
348 |
Q |
| |
|
| |||| ||||| ||||| || |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
9881092 |
ggtgcaatattgtcccactgagttgcaacttgcagatggttttactaaggcagtaaa |
9881148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 342
Target Start/End: Original strand, 26904994 - 26905181
Alignment:
| Q |
155 |
atgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaagaatccaatctcacatggcaggagtaaacacattgagaccatattcc |
254 |
Q |
| |
|
||||| |||||||||||||| ||||| || ||||||| ||||||||||| ||||| || || || ||||| | || |||||||||||||| | ||||| |
|
|
| T |
26904994 |
atgaaacctctaacactgaagattgacaacaaatcagccataagtcttgctaagaaccctatttctcatggtataagcaaacacattgagactagattcc |
26905093 |
T |
|
| Q |
255 |
atttcattagagagcatgtgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttacaaaggc |
342 |
Q |
| |
|
| |||||| | ||||| ||| ||||| |||||||||||| || ||||| || | ||||||||| ||||| ||| ||||||||||| |
|
|
| T |
26905094 |
acttcattggggagcagatgaataatgaaatgattgagctacattattgtcctatagaactgcagcttgcatgtggctttacaaaggc |
26905181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 1621392 - 1621337
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| || ||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
1621392 |
tgttcgcagattcaccctatacgtttttagcaatattgatcatgttattgtctctg |
1621337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 18936020 - 18936065
Alignment:
| Q |
379 |
ttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
18936020 |
ttcaccctatatgtttttagcgatattgatcatgctattgtctctg |
18936065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 36194936 - 36194984
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttatt |
417 |
Q |
| |
|
|||||| || |||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
36194936 |
tgttcgcagattcaccttatatgtttttagtgatattgatcgtgttatt |
36194984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 48 - 366
Target Start/End: Complemental strand, 18641545 - 18641227
Alignment:
| Q |
48 |
cagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaagcactacggctggattcagtgatgaaggtatttaagtg |
147 |
Q |
| |
|
|||||||| |||| ||||| ||||||| ||||| || || || || ||||| |||||||||||| || ||||||||||||||||||| | | ||||| |
|
|
| T |
18641545 |
cagtcactacactatcatcctgtgaagttgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtg |
18641446 |
T |
|
| Q |
148 |
tgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaagaatccaatctcacatggcaggagtaaacacattgagacc |
247 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||| || |||||| ||||||||||| |||| ||| |||| |||||||| ||||||||| | |||||| |
|
|
| T |
18641445 |
tgaagtgataaagcctctgacactgaagattgacaacaaatcatccataagtcttgctaagagtcctgtctctcatggcagaagtaaacacttagagacc |
18641346 |
T |
|
| Q |
248 |
atattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttacaaaggcagtaa |
347 |
Q |
| |
|
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||| | |
|
|
| T |
18641345 |
agattccatttcattagggagcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatgcagtga |
18641246 |
T |
|
| Q |
348 |
agcttaacatatttgaatt |
366 |
Q |
| |
|
||||| ||| ||||||||| |
|
|
| T |
18641245 |
agcttgacaaatttgaatt |
18641227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 21289695 - 21289640
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| || ||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
21289695 |
tgttcgcagattcaccctatacgtttttagcgatattgatcatgttattgtctctg |
21289640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 32368398 - 32368336
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga |
72 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||| ||||||| || ||||||||||| |
|
|
| T |
32368398 |
caatgatgctgcaatttcatggtgcactaagagacaaccaatcactgctctatcatcatgtga |
32368336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 34982871 - 34983152
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaa |
109 |
Q |
| |
|
||||||| ||||||| |||||||| || |||||||||| |||||||||| |||||| ||||||| |||||||| | | || ||||| ||||||||| |
|
|
| T |
34982871 |
caatgatactgcaatttcatggtgtaccaagaagcaactagtcactgca--ctcatcctgtgaagttgagtatattgcatgaacatttgctacttgtcaa |
34982968 |
T |
|
| Q |
110 |
gcactacggctggattcagtgatgaaggtatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtc-------tt |
202 |
Q |
| |
|
| || || |||| | || |||||| | | |||||||||||| ||||||||||||||| || ||||| ||||| || | || |||| || |
|
|
| T |
34982969 |
gttttatggttggaattagcgatgaaagagctcaagtgtgaagtggtgaagcctctaacacagatgattgacaataagtctgctattagtcttgcaagtt |
34983068 |
T |
|
| Q |
203 |
gtaaagaatccaatctcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatg |
286 |
Q |
| |
|
| ||||||||| || || ||||||||||| || |||| |||||| | |||||||| ||||||||| | || || ||||||||| |
|
|
| T |
34983069 |
gcaaagaatcctatttctcatggcaggagcaagcacactgagactgtgttccattttattagagaggaagttacaaatggaatg |
34983152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 53508429 - 53508484
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| || |||||||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
53508429 |
tgttcgcagattcaccctttatgtttttagcgatattgatcatgttattgtatctg |
53508484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 32368201 - 32368165
Alignment:
| Q |
207 |
agaatccaatctcacatggcaggagtaaacacattga |
243 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32368201 |
agaatccaatagcacatggcaggagtaaacacattga |
32368165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 424
Target Start/End: Original strand, 51923949 - 51923989
Alignment:
| Q |
384 |
cctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
51923949 |
cctatacgtttttagcgatattgatcatgttattgtctctg |
51923989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 14233636 - 14233992
Alignment:
| Q |
10 |
caatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagaagagtatataactggtacttttgccacttgtcaa |
109 |
Q |
| |
|
|||||||||| | || || ||||||| |||||||||||| | ||||||||||||| ||||||| ||| |||| | | || ||||| ||||||||| |
|
|
| T |
14233636 |
caatgatgcttccatatcctggtgcatcaagaagcaaccaattactgcactctcattctgtgaagctgagcatattgcaagaacatttgctacttgtcaa |
14233735 |
T |
|
| Q |
110 |
gcactacggctggattcagtgatgaaggtatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaaga |
209 |
Q |
| |
|
|| | || | |||||||||||||||| |||| |||||||| ||||||||||||| || | |||||| || ||||| |||||| |||| |||| |
|
|
| T |
14233736 |
gctatgtggttagattcagtgatgaaggagcttaaatgtgaagtagtgaagcctctaaccctcagaattgacaacaaatcttccataagccttgctaaga |
14233835 |
T |
|
| Q |
210 |
atccaatctcacatggcaggagtaaacacattgagaccatattccatttcattagagagcatgtgactaatggaatgattgagctgcactattgccccac |
309 |
Q |
| |
|
|||| ||||||||||| || || || ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
14233836 |
atcctatctcacatggtagaagcaagcacattgagaccagattccatttcattagggagcaggtgactaatggaatgattgaggtgcaatattgtcccac |
14233935 |
T |
|
| Q |
310 |
agaactgcaacttgctgatggttttacaaaggcagtaaagcttaacatatttgaatt |
366 |
Q |
| |
|
|| ||||||||||| ||||||||||| ||||||||||| ||| ||| ||||||||| |
|
|
| T |
14233936 |
tgagctgcaacttgcagatggttttactaaggcagtaaaacttgacagatttgaatt |
14233992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 39567477 - 39567529
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtct |
421 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
39567477 |
tgttcgtagattcaccatatacgtttttagtgatattgatcatgttattgtct |
39567529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 28540787 - 28540735
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtct |
421 |
Q |
| |
|
|||||| || ||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
28540787 |
tgttcgcagattcaccctatacgtttttagcgatattgatcatgttattgtct |
28540735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 19103348 - 19103293
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| || |||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
19103348 |
tgttcgcagattcatcctatacgtttttagcgatattgatcatgttattgtctctg |
19103293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 14211434 - 14211486
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtct |
421 |
Q |
| |
|
|||||| || ||||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
14211434 |
tgttcgcagattcaccctatacgtttttagcgatattgatcatgctattgtct |
14211486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 2513 - 2429
Alignment:
| Q |
141 |
ttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagtcataagtcttgtaaagaatccaatctcacatgg |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| || || |||| |||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
2513 |
ttaagtgtgaagtgatgaagcctctaacattgagaattgacaacaagtcagccataagccttgtcaagaatcccatctctcatgg |
2429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0888 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0888
Description:
Target: scaffold0888; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 1559 - 1504
Alignment:
| Q |
369 |
tgttcgtaggttcaccctatatgtttttagtaatattgatcatgttattgtctctg |
424 |
Q |
| |
|
|||||| || ||||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
1559 |
tgttcgcagattcaccctatacgttttaagggatattgatcatgttattgtctctg |
1504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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