View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_high_18 (Length: 383)
Name: NF2240_high_18
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 144 - 365
Target Start/End: Original strand, 37100765 - 37100986
Alignment:
| Q |
144 |
aacatcaacaacacaagcaagcataacagttacaatagtactactagtagtgaagtgttgtgttgtgttaattgcaggtggagacagagagagggtagat |
243 |
Q |
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| T |
37100765 |
aacatcaacaacacaagcaagcataacagttacagtagtactactagtagtgaagtgttgtgttgtgttaattgcaggtggagacagagagagggtagat |
37100864 |
T |
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| Q |
244 |
aaagagttaacgtgtgtctctgcaacttaactcagagttttccttcccaatgaaatgaaaatgaatctcactgcccttcttggtctacgcaattactgct |
343 |
Q |
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| T |
37100865 |
aaagagttaacgtgtgtctctgcaacttaactcagagttttccttcccaatgaaatgaaaatgaatctcactgcccttcttggtctacgcaattactgct |
37100964 |
T |
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| Q |
344 |
gatcattctactgtttatgagt |
365 |
Q |
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| T |
37100965 |
gatcattctactgtttatgagt |
37100986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 37100616 - 37100741
Alignment:
| Q |
1 |
ggggttcttggaaagtataataatct----gtaaaaggtggaatcagattcatcttatgcaaaatgagtagtagtgtagtctttctttcatctttctgtt |
96 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37100616 |
ggggttcttggaaagtataataatctatctgtaaaaggtggaatcagattcatcttatgcaaaatgagtagtagtgtagtctttctttcatctttctgtt |
37100715 |
T |
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| Q |
97 |
gtgtacatcaaacaaatcaaatagtt |
122 |
Q |
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| T |
37100716 |
gtgtacatcaaacaaatcaaatagtt |
37100741 |
T |
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