View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_high_20 (Length: 327)
Name: NF2240_high_20
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 9843577 - 9843895
Alignment:
| Q |
1 |
gtcaaaaaatagagtataatataggtataaagcgacatgtgcgcacttgcgtgcg-cgcacccacacccgcacgc--ccatcttaaatcaagtcaaatga |
97 |
Q |
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| T |
9843577 |
gtcaaaaaatagggtatgacatgagtataaagcgacatgtgcgcacacgcgcgcgacacacacccacccgcacgcacccatcttaaatcaagtcaaatga |
9843676 |
T |
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| Q |
98 |
aaattatagtaaaaataatactacgttatattgactaaatatgttattgtttgac---agcaaaatccatcacaattttgctcttactatccctatcaaa |
194 |
Q |
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| T |
9843677 |
aaattatagtaaaaataatat---gttatattgactaaatatgttattgtttgactacagcaaaatccatcacaattttgctcttactattcctatcaaa |
9843773 |
T |
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| Q |
195 |
aaacaattttgttcttactattggtgggtctttgttgttgtagttatgttatcatgatctagagtgttggatgtgaccacaacctcaatttctttgattt |
294 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9843774 |
aaacaattttgttcttactactggtgggtctttgttgttgtagttatgttatcatgatctagagtgatggatgtgaccacaacctcaatttctttgattt |
9843873 |
T |
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| Q |
295 |
ctagatgagtcccttttttcat |
316 |
Q |
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|| ||||||||||||||||||| |
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| T |
9843874 |
ctggatgagtcccttttttcat |
9843895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 141 - 316
Target Start/End: Original strand, 9836002 - 9836177
Alignment:
| Q |
141 |
ttattgtttgacagcaaaatccatcacaattttgctcttactatccctatcaaaaaacaattttgttcttactattggtgggtctttgttgttgtagtta |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9836002 |
ttattgtttgacagcaaaatccatcacaattttgctcttactattcctatcaaaaaacaattttgttcttactattggtgggtctttgttgttgtagtta |
9836101 |
T |
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| Q |
241 |
tgttatcatgatctagagtgttggatgtgaccacaacctcaatttctttgatttctagatgagtcccttttttcat |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9836102 |
tgttatcatgatctagagtggtggatgtgaccacaacctcaatttctttgatttctggatgagtcccttttttcat |
9836177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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