View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_high_25 (Length: 271)
Name: NF2240_high_25
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_high_25 |
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| [»] scaffold0256 (2 HSPs) |
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| [»] scaffold0133 (3 HSPs) |
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Alignment Details
Target: scaffold0256 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 10492 - 10628
Alignment:
| Q |
74 |
gcaagtgtataatttagctgctgtttggtcaggaatatgaaatttcaactatatctattatgttactttcatgcactattgttaatctcaaaataatagg |
173 |
Q |
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| T |
10492 |
gcaagtgtataatttagctg---tttggtcaggaatatgaaatttcaactatatctattatgttactttcatgcactattgtttatctcaaaataatagg |
10588 |
T |
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| Q |
174 |
tatcctttctcggtgtctttctttaatactctagagagaa |
213 |
Q |
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| T |
10589 |
tatcctttcttggcgtctttctttaatactctagacagaa |
10628 |
T |
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Target: scaffold0256; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10447 - 10497
Alignment:
| Q |
1 |
ttatttaatatttcaagttggcagtgtacctgaagttcaagtggatcaagt |
51 |
Q |
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| T |
10447 |
ttatttaatatttcaagttggcagtgtacctcaagtgcaagtggagcaagt |
10497 |
T |
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Target: scaffold0133 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 14169 - 14261
Alignment:
| Q |
1 |
ttatttaatatttcaagttggcagtgtacctgaagttcaagtggatcaagtatggtgggatggcatcaagttggcaagtgtataatttagctg |
93 |
Q |
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| T |
14169 |
ttatttaatatttcaagttggcagtgtacctgaagtgcaagtggatcaagtatggtgggatggtatcaagttggcaagtgtataatttagctg |
14261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9830 - 9909
Alignment:
| Q |
1 |
ttatttaatatttcaagttggcagtgtacctgaagttcaagtggatcaagtatggtgggatggcatcaagttggcaagtg |
80 |
Q |
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| T |
9830 |
ttatttaatatttcaagttggcagtgtacctgaagtgcaagtggatcaagtatggtgggatggcatcaagttggcaagtg |
9909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 14271 - 14335
Alignment:
| Q |
158 |
atctcaaaataataggtatcctttctcggtgtctttctttaatactctagagagaacttcaactt |
222 |
Q |
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| T |
14271 |
atctcaaaataataggtatcctttcttggcgtctttctttaatactctagacagaacctcaactt |
14335 |
T |
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