View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2240_high_28 (Length: 253)
Name: NF2240_high_28
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_high_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 48421714 - 48421501
Alignment:
| Q |
18 |
caaagggcaagttgaaaccaatatcaaatgtcaaatatgaagaagtataaaccaaaccatactccaagtagaaaattcccaaagacacaacaaattacga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48421714 |
caaagggcaagttgaaaccaatatcaaatgtcaaatatgaagaagtataaaccaaaccatactccaagtagaaaattcccaaagacacaacaaattacga |
48421615 |
T |
|
| Q |
118 |
atgaacacattagaagtaactctagtcctctgctatatttttctctggcacatagtacattatcttaagagagaagttcgcatagatgctactacattta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48421614 |
atgaacacattagaagtaactctagtcctctgctatatttttctctggcacatagtacattatcttaagagagaagttcgcatagatgctactacattta |
48421515 |
T |
|
| Q |
218 |
gaagagttctttac |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48421514 |
gaagagttctttac |
48421501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University