View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_high_32 (Length: 237)
Name: NF2240_high_32
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_high_32 |
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| [»] scaffold0489 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3616949 - 3617169
Alignment:
| Q |
1 |
attgtacagatgggctgccatagctgcataccttccacaaagaacagacaatgacataaaaaactattggaacacttatttgaagaaaaagctgaaaaaa |
100 |
Q |
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| T |
3616949 |
attgtacagatgggctgccatagctgcataccttccacaaagaacagacaatgacataaaaaactattggaacacttatttgaagaaaaagctgaaaaaa |
3617048 |
T |
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| Q |
101 |
ttggaaacaagtacttcttctgaatcatgtttaggtcatgatgaattcttagtttctcaaccaatagctagaggacaatgggaaagaagacttcaaactg |
200 |
Q |
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| T |
3617049 |
ttggaaacaagtacttcttctgaatcatgtttaggtcatgatgaattctcagtttctcaaccaatagctagaggacaatgggaaagaagacttcaaactg |
3617148 |
T |
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| Q |
201 |
acattcacatggccaaaaaag |
221 |
Q |
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| T |
3617149 |
atattcacatggccaaaaaag |
3617169 |
T |
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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 2461509 - 2461596
Alignment:
| Q |
6 |
acagatgggctgccatagctgcataccttccacaaagaacagacaatgacataaaaaactattggaacacttatttgaagaaaaagct |
93 |
Q |
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| T |
2461509 |
acagatgggctgcaatagcatcataccttccacaaagaacagataatgacataaaaaactattggaatactcatttgaaaaagaagct |
2461596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 33928564 - 33928469
Alignment:
| Q |
7 |
cagatgggctgccatagctgcataccttccacaaagaacagacaatgacataaaaaactattggaacacttatttgaagaaaaagctgaaaaaatt |
102 |
Q |
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| T |
33928564 |
cagatgggcagccatagcttcataccttccacaaagaacagataatgatataaagaattattggaacacacatctaaagaaaaagctcaacaaatt |
33928469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 2461676 - 2461727
Alignment:
| Q |
170 |
agaggacaatgggaaagaagacttcaaactgacattcacatggccaaaaaag |
221 |
Q |
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| T |
2461676 |
agaggtcaatgggaaagaagacttcaaacagatattcaaatggccaaaaaag |
2461727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 28944926 - 28944878
Alignment:
| Q |
40 |
aagaacagacaatgacataaaaaactattggaacacttatttgaagaaa |
88 |
Q |
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| T |
28944926 |
aagaacagacaatgagataaagaacttttggaacacacatttgaagaaa |
28944878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 13993451 - 13993366
Alignment:
| Q |
8 |
agatgggctgccatagctgcataccttccacaaagaacagacaatgacataaaaaactattggaacacttatttgaagaaaaagct |
93 |
Q |
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|||||||||||||||||| | || |||||| ||||||||||||||||||| |||||||||||||| || |||||| ||||||||| |
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| T |
13993451 |
agatgggctgccatagcttcctatcttccagaaagaacagacaatgacatcaaaaactattggaatacacatttgaggaaaaagct |
13993366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 10335 - 10270
Alignment:
| Q |
7 |
cagatgggctgccatagctgcataccttccacaaagaacagacaatgacataaaaaactattggaa |
72 |
Q |
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| T |
10335 |
cagatgggctgctatagcttcatatcttccacaaaggacagacaatgacataaaaaattattggaa |
10270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 10693 - 10758
Alignment:
| Q |
7 |
cagatgggctgccatagctgcataccttccacaaagaacagacaatgacataaaaaactattggaa |
72 |
Q |
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|||||||||||| |||||| |||| ||||||||||| |||||||||||||||||||| |||||||| |
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| T |
10693 |
cagatgggctgctatagcttcatatcttccacaaaggacagacaatgacataaaaaattattggaa |
10758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 53557731 - 53557766
Alignment:
| Q |
40 |
aagaacagacaatgacataaaaaactattggaacac |
75 |
Q |
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| T |
53557731 |
aagaacagacaatgacataaaaaactattggaacac |
53557766 |
T |
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