View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_high_4 (Length: 643)
Name: NF2240_high_4
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_high_4 |
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| [»] scaffold0489 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 69 - 443
Target Start/End: Complemental strand, 3616781 - 3616412
Alignment:
| Q |
69 |
tcatttgcaactacgatctgaggcgtgacatcaacgttttaaatacctctttaaatcgtattgtgaaaacaatttaggttacatcagccgtattcgattg |
168 |
Q |
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||||||||||||||||| |||| |||||||||||| ||||||||| || |||||||||| ||||||| ||||||||||||||| || ||||||| |||| |
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| T |
3616781 |
tcatttgcaactacgatttgagtcgtgacatcaacattttaaatatctttttaaatcgtgttgtgaacgcaatttaggttacataagtcgtattcaattg |
3616682 |
T |
|
| Q |
169 |
tgattctcaagaagttagagatcgtgatgcaaccacatttatgagagtaatttaaaaa-ttttgtatattattcnnnnnnnnnnnnnctaggtggttgta |
267 |
Q |
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| T |
3616681 |
tgattctcgagaagttagagattgtgatgcaaccacatttatgagagtaatttaaaaacttttgtatattattcaaaaattaaaaaactaggtggttat- |
3616583 |
T |
|
| Q |
268 |
gttgtggtagaaaaagaggttgaagaataatcaatgaatatacctgtttcctaaaagagcttgaagatgaataatcattttctcttcttggtcagttaag |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3616582 |
-----ggtagaaaaagaggttgaagaataatcaatgaatatacctgtttcctaaaagagcttgaagatgaataatcattttctcttcttggtcagtgaag |
3616488 |
T |
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| Q |
368 |
ttaccccttgtgattcctggccgtagataatattgcgatctaaatctgcaactcttactacaccataacaaacctg |
443 |
Q |
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||||||||| |||||||||||| |||||||| | | |||||| |||||||||||||||||||| ||||||||||| |
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| T |
3616487 |
ttaccccttttgattcctggccttagataatttgtccatctaagtctgcaactcttactacaccttaacaaacctg |
3616412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 629
Target Start/End: Complemental strand, 3616265 - 3616227
Alignment:
| Q |
591 |
ctatatcaagtaaccttaaaagaatcaaaatttcctatg |
629 |
Q |
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| T |
3616265 |
ctatatcaagtaaccttaaaagaatcaaaatttcctatg |
3616227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 308 - 398
Target Start/End: Complemental strand, 2460982 - 2460892
Alignment:
| Q |
308 |
tacctgtttcctaaaagagcttgaagatgaataatcattttctcttcttggtcagttaagttaccccttgtgattcctggccgtagataat |
398 |
Q |
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||||| |||||||||||| |||||||||| |||||||| ||||| ||||| ||||| |||||||||| | |||||||||||| ||| |||| |
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| T |
2460982 |
tacctatttcctaaaagatcttgaagatggataatcatcttctcctcttgttcagtgaagttaccccgtttgattcctggccttaggtaat |
2460892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 429
Target Start/End: Original strand, 10567 - 10687
Alignment:
| Q |
309 |
acctgtttcctaaaagagcttgaagatgaataatcattttctcttcttggtcagttaagttaccccttgtgattcctggccgtagataatattgcgatct |
408 |
Q |
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||||||| || ||||||||||| || |||| ||||||||||||||| || || || |||||||| ||| |||| ||||| || ||||| | | | |||| |
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| T |
10567 |
acctgttgcccaaaagagcttggaggtgaacaatcattttctcttcatgatctgtgaagttacctcttttgatacctggtcgaagatagtttgtccatct |
10666 |
T |
|
| Q |
409 |
aaatctgcaactcttactaca |
429 |
Q |
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|| |||||| ||||||||||| |
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| T |
10667 |
aagtctgcagctcttactaca |
10687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 429
Target Start/End: Complemental strand, 10461 - 10341
Alignment:
| Q |
309 |
acctgtttcctaaaagagcttgaagatgaataatcattttctcttcttggtcagttaagttaccccttgtgattcctggccgtagataatattgcgatct |
408 |
Q |
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||||||| || ||||||||||| || |||| ||||||||||||||| || || || |||||||| ||| |||| ||||| || ||||| | | | |||| |
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| T |
10461 |
acctgttgcccaaaagagcttggaggtgaacaatcattttctcttcatgatctgtgaagttacctcttttgatacctggtcgaagatagtttgtccatct |
10362 |
T |
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| Q |
409 |
aaatctgcaactcttactaca |
429 |
Q |
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|| |||||| ||||||||||| |
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| T |
10361 |
aagtctgcagctcttactaca |
10341 |
T |
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