View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_high_7 (Length: 531)
Name: NF2240_high_7
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 513
Target Start/End: Complemental strand, 36951069 - 36950562
Alignment:
| Q |
9 |
gacatcatcatttgtaaaggacttctcttcaaacctacgttaacaagaaacagttaaataacaatacattgctacatgcatacagaacagaatacacggt |
108 |
Q |
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| T |
36951069 |
gacatcaccatttgtaaaggacttctcttcaaacctacgttaacaggaaacagttaaataacaatacattgctacatgcatacagaacagaatacacggt |
36950970 |
T |
|
| Q |
109 |
caaaacaaaatacaaaa-caaaggagaatgaataggaaag--tagtaatttctatgaacattaccttccattgtcctccatgactagcagaatatcacta |
205 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950969 |
caaaacaaaatacaaaaacaaaggagaatgaataggaaagaatagtaatttctatgaacattaccttccattgtcctccatgactagcagaatatcacta |
36950870 |
T |
|
| Q |
206 |
atttatttagataacttcaggaagtgagccatttcttttgaaaggttaaacatgttactcacagctaagatnnnnnnnnttcatcttctcatccaccagc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
36950869 |
atttatttagataacttcaggaagtgagccatttcttttgaaaggttaaacatgttactcacagctaagataaaaaaaattcatcttctcatcgaccagc |
36950770 |
T |
|
| Q |
306 |
tttttattgtgacccaatctgaaacatatacagccaatataatgagtttgaaaacacggaagaaaaaacaacaatgaatcctttaacaggtttcaacgct |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36950769 |
tttttattgtgacccaatctgaaacatatacagccaatataatgagtttgaaaacacggaagaaaaaacaacaatgaatcctttaacaggtttcaacact |
36950670 |
T |
|
| Q |
406 |
aaagaatgcttttggaatcttttcccgcaaaattccaaagacagaaaaaggagggaccatccacttatttagatgtttttaccaaccattattttcaata |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950669 |
aaagaatgcttttggaatcttttcccgcaaaattccaaagacagaaaaaggagggaccatccacttatttagatgtttttaccaaccattattttcaata |
36950570 |
T |
|
| Q |
506 |
atcttttt |
513 |
Q |
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| T |
36950569 |
atcttttt |
36950562 |
T |
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