View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_low_11 (Length: 488)
Name: NF2240_low_11
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 33696824 - 33696483
Alignment:
| Q |
18 |
aaataatggaaagggtagaagagaatgtattaaagtggaagattgtacaagggataaaaacaacttaaaacttcatcatcaacccaattcgacttcttca |
117 |
Q |
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| T |
33696824 |
aaataatggaaagggtagaagagaatgtattaaagtggaagattgtacaagggataaaaacaacttaaaacttcatcatcaacccaattcgacttcttca |
33696725 |
T |
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| Q |
118 |
ctcaaagaacaacaactactcaagttactcatatcaacatctacaaagagggcaaggtgattttggttttttgcaagtcacaactgttttcggtggtaat |
217 |
Q |
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| T |
33696724 |
ctcaaagaa--acaactactcaagttactcatatcaacatctacaaagagggcaaggtgatgttggttttttgcaagtcacaactgttttcggtggtaat |
33696627 |
T |
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| Q |
218 |
gatgatcaccatttcgttaggtgtgttgctggtgtatttgaagcggaagagcaccaatgatatgctctttttgcgcgtgaatcgggtagaaactgatctc |
317 |
Q |
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| T |
33696626 |
gatgatcaccatttcgttaggtgtgttgctggtgtatttgaagcggaagagcaccaatgatatgctctttttgcgcgtgaatcaggtagaaactgatctc |
33696527 |
T |
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| Q |
318 |
ttgagttgggt--atataactccaacggataataaatttttcct |
359 |
Q |
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| T |
33696526 |
ttgagttgggtacatataactacaacggataataaatttttcct |
33696483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 346 - 477
Target Start/End: Complemental strand, 33696261 - 33696130
Alignment:
| Q |
346 |
aataaatttttccttcaagattaaacgttattgcattctttgagtttaattcgaatccatgacctctatttaaactatatatnnnnnnntctttatcatc |
445 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33696261 |
aataaatttttccttcaagattaaacgtcattgcattctttgagcttaattcgaatccatgacctctatttaaactatatataaaaaaatctttatcatc |
33696162 |
T |
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| Q |
446 |
tcattcaaatattcttttggtcataagttctt |
477 |
Q |
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||||||||||||||||| |||||||||||||| |
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| T |
33696161 |
tcattcaaatattctttgggtcataagttctt |
33696130 |
T |
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