View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_low_13 (Length: 441)
Name: NF2240_low_13
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 34379777 - 34380009
Alignment:
| Q |
9 |
ccttctgttcctccctctgaaactgctgctagtgcttcttctatgttggaagaatctattcgaaaacagaagcttgaatgcggttctttgtcaaaagcta |
108 |
Q |
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| T |
34379777 |
ccttctgttcctccctctgaaactgctgctagtgcttcttctatgttggaagaatctattcgaaaacagaagcttgaatgcggttctttgtcaaaagcta |
34379876 |
T |
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| Q |
109 |
ttattgattctgtttggaaatcattggccttaaatgctgttttagcaggtataatcctaatagactatatgcaacattatgtcatgcatgtactcatttc |
208 |
Q |
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| T |
34379877 |
ttgttgattctgtttggaaatcattggccttaaatgctgttttagcaggtataatccttatagactatatgcaacattatgttatgcatgtactcatttc |
34379976 |
T |
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| Q |
209 |
ttactaatttgtttattttatttttatgtactt |
241 |
Q |
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| T |
34379977 |
ttactaatttgtttattttatttttatgtactt |
34380009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 213 - 433
Target Start/End: Original strand, 34380045 - 34380265
Alignment:
| Q |
213 |
taatttgtttattttatttttatgtactttatgaaacatgtagtcattctgttttatatattgtgattagtaatttgtttattttatttatactttcagg |
312 |
Q |
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| T |
34380045 |
taatttgtttattttatttttatgtactttatgaaacatgtagtcattctgttttatatattgtgattagtaatttgtttattttatttatactttcagg |
34380144 |
T |
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| Q |
313 |
tgttaacactattgctgcttatattggtcccttattgatatcaaactttgtgaattttttattgtcgaatgatgataattcaaacatcaaatatggattg |
412 |
Q |
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| T |
34380145 |
tgttaacactattgctgcttatattggtcccttattgatatcaaactttgtgaattttttattgtcgaatgatgataattcaaacatcaaatatggattg |
34380244 |
T |
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| Q |
413 |
attcttgccttcatattcttc |
433 |
Q |
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| T |
34380245 |
attcttgccttcattttcttc |
34380265 |
T |
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