View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_low_16 (Length: 396)
Name: NF2240_low_16
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 40 - 385
Target Start/End: Original strand, 11609109 - 11609455
Alignment:
| Q |
40 |
tcatttcaaatgaagatatgatgcacctcatttgtgtggagaacttatgtgtaatcaaaatgaatctaaaatggtttcaatcattttcaaatttgatgcc |
139 |
Q |
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| T |
11609109 |
tcatttcaaatgaagatatgatgcacctcatttgtgtggagaacttatgtgtaatcaaaatgaatctaaagtggtttcaattattttcaaatttgatgcc |
11609208 |
T |
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| Q |
140 |
aacttctcaaat-tttaagttagggcaaatgtagctccccttttcttcttttctacttttgtagtttagcttcttgatttggaacccagggtcgatgtct |
238 |
Q |
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| T |
11609209 |
aacttctcaaaaatttaagttagggcaaatgtagctccccttttcttcttttctacttttgtagtttagcttcttgatttggaactcaaggtcgatgcct |
11609308 |
T |
|
| Q |
239 |
ttcttgtatcgcgggctttcgattagtgcaaacctaaggaattgtttcactttgaaacctatgttaaacgttgtagacaataagcttaggttttggcgta |
338 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
11609309 |
ttcttgtatctcgggctttcgattagtgcaaacctaaggaattgtttcactttgaaacctatgttaaacgttgtagacaataagattaggttttggcata |
11609408 |
T |
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| Q |
339 |
ataggtatgtcacccttacagccgaagaaaattttattccgattcat |
385 |
Q |
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| T |
11609409 |
ataggtatgtcagccttatagcggaagaaaattttattccgattcat |
11609455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 113 - 385
Target Start/End: Original strand, 11598635 - 11598908
Alignment:
| Q |
113 |
gtttcaatcattttcaaatttgatgccaacttctcaaattttaag----ttagggcaaatgtagctccccttttcttcttttctacttttgtagtttagc |
208 |
Q |
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| T |
11598635 |
gtttcaattattttcaaatttggtgccaacttctcaatatttaggcttattagggcaaacgtagccccccttttgttcttgt--acttctgtagtt-agc |
11598731 |
T |
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| Q |
209 |
ttcttgatttggaacccagggtcgatgtctttcttgtatcgcgggctttcgattagtgcaaacctaaggaattgtttcactttgaaacctatgttaaacg |
308 |
Q |
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| T |
11598732 |
ttgttgatttacatctgagggttgatgcctttctcgtatctcggtctttcgattagtgcaaacctaagtaattgtttcactttgaaacctatgttaaacg |
11598831 |
T |
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| Q |
309 |
ttgtagacaataagcttaggttttggcgtaataggtatgtcacccttacagccgaagaaaattttattccgattcat |
385 |
Q |
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| T |
11598832 |
ttctacacaataggcttaggttttggcgtaataggtatgtcagccttatagcgaaagaaaattttatttcgattcat |
11598908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 113 - 385
Target Start/End: Original strand, 11586046 - 11586319
Alignment:
| Q |
113 |
gtttcaatcattttcaaatttgatgccaacttctcaaattttaag----ttagggcaaatgtagctccccttttcttcttttctacttttgtagtttagc |
208 |
Q |
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|||||||| ||||||||||||| |||||||||||||| |||| | |||||||||||||||| ||||||| ||||| | |||| ||||||| ||| |
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| T |
11586046 |
gtttcaattattttcaaatttggtgccaacttctcaatatttaggcttattagggcaaatgtagcctcccttttgttcttgt--acttctgtagtt-agc |
11586142 |
T |
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| Q |
209 |
ttcttgatttggaacccagggtcgatgtctttcttgtatcgcgggctttcgattagtgcaaacctaaggaattgtttcactttgaaacctatgttaaacg |
308 |
Q |
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| T |
11586143 |
ttgttgatttacatctcagggttgatgcctttctcgtatctcggtttttcgattagtgcaaacctaaggaattctttcactttgaaacctatgttaaacg |
11586242 |
T |
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| Q |
309 |
ttgtagacaataagcttaggttttggcgtaataggtatgtcacccttacagccgaagaaaattttattccgattcat |
385 |
Q |
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| T |
11586243 |
ttctacacaataggcttaggttttggcgtaataggcatgtcagccttatagcgaaagaaaaatttatttcgattcat |
11586319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 11598570 - 11598628
Alignment:
| Q |
19 |
tttcctacacttccttccatgtcatttcaaatgaagatatgatgcacctcatttgtgtg |
77 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11598570 |
tttcctacacttccgtccatgtcatttcaaatgaacatatgatgcacctcatttgtgtg |
11598628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 11585978 - 11586039
Alignment:
| Q |
19 |
tttcctacacttccttccatgtcatttca---aatgaagatatgatgcacctcatttgtgtg |
77 |
Q |
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| T |
11585978 |
tttcctacacttccgtccatgtcatttcaaataatgaacatatgatgcacctcatttgtgtg |
11586039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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