View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2240_low_17 (Length: 395)
Name: NF2240_low_17
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_17 |
 | |
|
| [»] scaffold0316 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 32240086 - 32239716
Alignment:
| Q |
17 |
ctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaaaaacatcattttatgaaagacacgttgaaacacactgtaacaacaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32240086 |
ctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaaaaacatcattttatgaaagacacgttgaaacacactgtaacaacaa |
32239987 |
T |
|
| Q |
117 |
ccgttcctctgttctcgcatcagttctgccgctctatgttctatcgtcttctacaatcccctttcctaattggaaacataatcgcacaaattggtaaaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32239986 |
ccgttcctctgttctcgcatcagttctgccgctctatgttctatcgtcttctacaatcccctttcctaattggaaacataatcgcacaaattggtaaaca |
32239887 |
T |
|
| Q |
217 |
tcgaatgatgttagaaaaatttcaaccatgtcataacttctgttaataaaatttagactatattcatagcttcaaatccccttttccaattggaaataaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32239886 |
tcgaatgatgttagaaaaatttcaaccatatcataacttctgttaataaaatttagactatattcatagcttcaaatccccttttccaattcgaaataaa |
32239787 |
T |
|
| Q |
317 |
actaacccatggctattagcagtggcaattttgtttctgctatccaccttttgctataaataatgatgatg |
387 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
32239786 |
actaacccatcgctgttagcagtggcaatttcgtttatgttatccaccttttgctataaataatgatgatg |
32239716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 32239475 - 32239528
Alignment:
| Q |
17 |
ctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32239475 |
ctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa |
32239528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 26 - 387
Target Start/End: Complemental strand, 27118442 - 27118092
Alignment:
| Q |
26 |
gatggatgacacgtggcaactaaaaatcagatggctaggattaaaaaacatcattttatgaaagacacgttgaaacacactgtaacaacaaccgttcctc |
125 |
Q |
| |
|
||||||||||| ||||||| ||||| | || | ||| |||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
27118442 |
gatggatgacatgtggcaattaaaatttcgagagttagaattaaaaagcatcaatttatgaaagtcacagtgaaacacactgtaacaaccaccgttcctc |
27118343 |
T |
|
| Q |
126 |
tgttctcgcatcagttctgccgctctatgttctatcgtcttctacaatcccctttcctaattggaaacataatcgcacaaattggtaaacatcgaatgat |
225 |
Q |
| |
|
|| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||| ||||| |
|
|
| T |
27118342 |
tgctctcg------ttctg--gctctatgttctatcgtcttctacaatcccatttcctaattggaaacagaatcacacaaattgataaacatcacatgat |
27118251 |
T |
|
| Q |
226 |
gttagaaaaatttcaaccatgtcataacttctgttaataaaatttagactatattcatagcttcaaatccccttttccaattggaaataaaactaaccca |
325 |
Q |
| |
|
||| |||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27118250 |
gttcgaaa---ttcaaccatatcataacttctgttaataaattttagactgtattcatagcttaaaatccccttttccaattggaaataaaattaaccca |
27118154 |
T |
|
| Q |
326 |
tggctattagcagtggcaattttgtttctgctatccaccttttgctataaataatgatgatg |
387 |
Q |
| |
|
| ||||||| |||||||||||| |||| || ||||| |||| |||||||||||| |||||| |
|
|
| T |
27118153 |
tcgctattaacagtggcaatttcgtttatgtcatccatctttcgctataaataatcatgatg |
27118092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 27117799 - 27117852
Alignment:
| Q |
17 |
ctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa |
70 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
27117799 |
ctcttcaccgatggatgacacatggcaactaaaaatccgatagctaggattaaa |
27117852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 387
Target Start/End: Complemental strand, 7267029 - 7266895
Alignment:
| Q |
261 |
aataaaatttagactatattcatagcttcaaatccccttttccaattggaaataaaactaacccat--------ggctattagcagtggcaattttgttt |
352 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||| ||||||||||| |
|
|
| T |
7267029 |
aataaaatttaaactttattcatagcttcaaatcccctttttcaattggaaataaaattaacccatctctacagaggtattagcagtgacaattttgttt |
7266930 |
T |
|
| Q |
353 |
ctgctatccaccttttgctataaataatgatgatg |
387 |
Q |
| |
|
|| |||||||||| |||||||||||| |||||| |
|
|
| T |
7266929 |
atgtcatccacctttcgctataaataataatgatg |
7266895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 23010988 - 23011041
Alignment:
| Q |
17 |
ctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23010988 |
ctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa |
23011041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 53371962 - 53371909
Alignment:
| Q |
17 |
ctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53371962 |
ctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa |
53371909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 3081 - 3028
Alignment:
| Q |
17 |
ctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3081 |
ctcttcactgatggatgacacgtggcaactaaaaatcagatggttaggattaaa |
3028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University