View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_low_19 (Length: 328)
Name: NF2240_low_19
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 4 - 317
Target Start/End: Original strand, 4835674 - 4835987
Alignment:
| Q |
4 |
actatgtcagttgtataacatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcattcatcaagatcgggct |
103 |
Q |
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| T |
4835674 |
actatgtcagctgtataacatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcattcatcaagatcgggct |
4835773 |
T |
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| Q |
104 |
catagataggaagttgatcatgatagttttaaataacatagagtgaagttttggtcaggttttgattcttaatattgtggagaaaggcgatcaaaatgca |
203 |
Q |
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| T |
4835774 |
catagataggaagttgatcatgatagttttaaataacacagagtgaagttttggttaggttttgattcttaatattgtggagaaaggcgatcaaaatgca |
4835873 |
T |
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| Q |
204 |
gccgatgctgcctcgtccgcaatcgcatgatggtttcaacaaaatcaaaaaccgttatgtcacgcggtcacaaacctttatttaaaacccctcaattatt |
303 |
Q |
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| T |
4835874 |
gccgatgctgccttgtctgcaatcacatgatgatttcaactaaatcaaaaatcgttatatcacgcagtcacaaacctttatttaaaacccctcaattatt |
4835973 |
T |
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| Q |
304 |
cgctcattttcttc |
317 |
Q |
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| T |
4835974 |
cgctcattttcttc |
4835987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 4798042 - 4797977
Alignment:
| Q |
21 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatca |
86 |
Q |
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| T |
4798042 |
acatgttttttaacatcagtgctgaagaaaaggttcttgccgcgatattgctttactacatcatca |
4797977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 4819528 - 4819593
Alignment:
| Q |
21 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatca |
86 |
Q |
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| T |
4819528 |
acatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttactacatcatca |
4819593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 10779323 - 10779387
Alignment:
| Q |
21 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatca |
86 |
Q |
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| T |
10779323 |
acatgtttttcaacatcagtgctgaagaaaagg-tcttgctgcgacattactttactacataatca |
10779387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 4814946 - 4815012
Alignment:
| Q |
20 |
aacatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatca |
86 |
Q |
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| T |
4814946 |
aacatgtttttcaacatcaattccaaagaaaaggttcttacagcaacattgctttaatacatcatca |
4815012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 4803931 - 4803996
Alignment:
| Q |
21 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatca |
86 |
Q |
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|||||||||| |||||| || |||||| ||||| ||| | |||||||||||||||||||||||| |
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| T |
4803931 |
acatgtttttcaacatcagtgttgaagacaaggtacttgcatcgacattgctttactacatcatca |
4803996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 4807483 - 4807532
Alignment:
| Q |
20 |
aacatgttttttgacatcaatgctgaagaaaaggttctttctgcgacatt |
69 |
Q |
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||||||||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
4807483 |
aacatgtttttcaacatcaattctgaagaaaaggttcttattgcgacatt |
4807532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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