View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2240_low_2 (Length: 739)
Name: NF2240_low_2
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 106 - 430
Target Start/End: Original strand, 34377647 - 34377973
Alignment:
| Q |
106 |
ggagggtttattttgaaagataaagaacttgaataaaaataagaataaaatactaaagtgttgcaactaaataagataaatgaccccaaagtaactttgt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34377647 |
ggagggtttattttgaaagataaagaacttgaatgaaaataagaataaaatactaaagtgttgcaactaaataagataaatgaccccaaagtaattttgt |
34377746 |
T |
|
| Q |
206 |
ttaataataaaatacatttctaaatacattttttatccggaggaaaacaacaacaaaa--aactaaagactaagcaacttggtgactaaaaactctatag |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34377747 |
ttaataataaaatacatttctaaatacattttttatccggaggaaaacaacaacaaaaaaaactaaagactaagcaacttggtgactaaaaactctatag |
34377846 |
T |
|
| Q |
304 |
gagtcggcgaacaagatagaatctagctgccgaggaggagaggtccatatcttcaaggtgtcaatgttgtcggcctcatatttaggcagtcaatcagcac |
403 |
Q |
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|
|||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34377847 |
gagtcggcgaacaagatataatttagctgccgaggaggaaaggtccatatcttcaaggtgtcaatattgtcggcctcatatttaggcagtcaatcagcac |
34377946 |
T |
|
| Q |
404 |
atttattgtcttccttcaagatgtggg |
430 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
34377947 |
atttattgtcttccttcaagatgtggg |
34377973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 609 - 725
Target Start/End: Original strand, 34378140 - 34378255
Alignment:
| Q |
609 |
agctacccaaattcaacccatctttgctagctaggtcttcaatttttgttagaatggccaatattttcatgtcatgacaaaaaatgaaagttgtatactt |
708 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34378140 |
agctacccaaattcaacccatctt-gctagctaggtcttcaatttttgttagaatggccaatattttcatgtcatgacaaaaaatgaaagttgtatactt |
34378238 |
T |
|
| Q |
709 |
tggcacgatgtataaca |
725 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
34378239 |
tggcacgatgtataaca |
34378255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 34377252 - 34377354
Alignment:
| Q |
15 |
aatgaacagaagatgatcaacttatgaataagaggaataagaagatttannnnnnngggttattttggagaaaagaagaagtggttgatatggagggttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
34377252 |
aatgaacagaagatgatcaacttatgaataagaggaataagaagatttatttttttgggtt-ttttggagaaaagaagaagtggttgataaggagggttt |
34377350 |
T |
|
| Q |
115 |
attt |
118 |
Q |
| |
|
|||| |
|
|
| T |
34377351 |
attt |
34377354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 34378053 - 34378093
Alignment:
| Q |
510 |
ctagttctccacataatttgctacgtcactttcatttaaat |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34378053 |
ctagttctccacataatttgctacgtcactttcatttaaat |
34378093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 260 - 417
Target Start/End: Complemental strand, 28629731 - 28629574
Alignment:
| Q |
260 |
aaaaaactaaagactaagcaacttggtgactaaaaactctataggagtcggcgaacaagatagaatctagctgccgaggaggagaggtccatatcttcaa |
359 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |
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|
| T |
28629731 |
aaaaaacaaaagactaagcaacttggtgcctaaaaactccagaggagtcggcgaacaagatagaatctagttgcggaggaagagaggtccatatcttcaa |
28629632 |
T |
|
| Q |
360 |
ggtgtcaatgttgtcggcctcatatttaggcagtcaatcagcacatttattgtcttcc |
417 |
Q |
| |
|
|| ||| ||||||| || ||||||||| ||| |||||||||||| |||||||||| |
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|
| T |
28629631 |
agtttcattgttgtcaaccccatatttagccagccaatcagcacatgcattgtcttcc |
28629574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 262 - 415
Target Start/End: Complemental strand, 24796527 - 24796374
Alignment:
| Q |
262 |
aaaactaaagactaagcaacttggtgactaaaaactctataggagtcggcgaacaagatagaatctagctgccgaggaggagaggtccatatcttcaagg |
361 |
Q |
| |
|
||||| |||||| ||| || |||||| |||||| | ||||||||| |||||| ||||||||||||| || |||||| |||| | |||||||||| |
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|
| T |
24796527 |
aaaacaaaagacgaagtaatttggtgtctaaaatttttataggagttggcgaaaaagatagaatctaattgtggaggagaagagatttatatcttcaaac |
24796428 |
T |
|
| Q |
362 |
tgtcaatgttgtcggcctcatatttaggcagtcaatcagcacatttattgtctt |
415 |
Q |
| |
|
| ||||| | ||| || |||||||||| ||||||||| ||||||| |||||||| |
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|
| T |
24796427 |
tatcaatatcgtcagcttcatatttagccagtcaatcggcacattcattgtctt |
24796374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 234 - 430
Target Start/End: Complemental strand, 34537176 - 34536976
Alignment:
| Q |
234 |
ttttttatccggaggaaaacaacaacaaaaaactaaa----gactaagcaacttggtgactaaaaactctataggagtcggcgaacaagatagaatctag |
329 |
Q |
| |
|
||||||||| |||||||||||| || |||||| ||| |||||||||| | |||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34537176 |
ttttttatcaggaggaaaacaataaaaaaaaaaaaaaaaaagactaagcaattcggtgcctaaaaactctagaggagtcggcgaacaagatagaatctag |
34537077 |
T |
|
| Q |
330 |
ctgccgaggaggagaggtccatatcttcaaggtgtcaatgttgtcggcctcatatttaggcagtcaatcagcacatttattgtcttccttcaagatgtgg |
429 |
Q |
| |
|
|| ||||||||||| ||||||||||||| |||||||||||| | ||| ||||||||| || ||||| ||||||| |||| ||||| ||||| ||||| |
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|
| T |
34537076 |
ttgtggaggaggagagatccatatcttcaaagtgtcaatgttgccagccccatatttagccatccaatcggcacattcattgccttccctcaaggtgtgg |
34536977 |
T |
|
| Q |
430 |
g |
430 |
Q |
| |
|
| |
|
|
| T |
34536976 |
g |
34536976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 272 - 422
Target Start/End: Original strand, 35507592 - 35507734
Alignment:
| Q |
272 |
actaagcaacttggtgactaaaaactctataggagtcggcgaacaagatagaatctagctgccgaggaggagaggtccatatcttcaaggtgtcaatgtt |
371 |
Q |
| |
|
||||||||||||| || ||||||| | | ||||||||||||| |||||||||||||| ||| || |||||||| | |||| ||||||||||| |
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|
| T |
35507592 |
actaagcaacttgttgtctaaaaatttcagaggagtcggcgaataagatagaatctagttgcggaagaggagagat--------tcaaagtgtcaatgtt |
35507683 |
T |
|
| Q |
372 |
gtcggcctcatatttaggcagtcaatcagcacatttattgtcttccttcaa |
422 |
Q |
| |
|
||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
35507684 |
gtcagcctcatatttagccagccaatcggcacattcattgtcttccttcaa |
35507734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 260 - 423
Target Start/End: Complemental strand, 34196849 - 34196683
Alignment:
| Q |
260 |
aaaaaactaaagactaagcaacttggtgactaaaaactctataggagtcggcgaacaagatagaatctagctgc---cgaggaggagaggtccatatctt |
356 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| | || ||||||||||||||||| |||||||| || |||||||||||||||||||||| |
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|
| T |
34196849 |
aaaaaacaaaagactaagcaacttggtgcctaaaaactccagagtagtcggcgaacaagatataatctagccgcggaggaggaggagaggtccatatctt |
34196750 |
T |
|
| Q |
357 |
caaggtgtcaatgttgtcggcctcatatttaggcagtcaatcagcacatttattgtcttccttcaag |
423 |
Q |
| |
|
|| |||||||||||| | ||| ||||||||| || ||||| |||||| |||| ||||| ||||| |
|
|
| T |
34196749 |
taaagtgtcaatgttgccagccccatatttagccaaccaatcgacacattcattgccttccctcaag |
34196683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 269 - 420
Target Start/End: Original strand, 18430163 - 18430314
Alignment:
| Q |
269 |
aagactaagcaacttggtgactaaaaactctataggagtcggcgaacaagatagaatctagctgccgaggaggagaggtccatatcttcaaggtgtcaat |
368 |
Q |
| |
|
|||||| |||| || |||| ||||||||| | | ||||| || ||||||||| |||||| || ||||| |||| |||||||||||||| |||||||| |
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|
| T |
18430163 |
aagacttagcagctcggtgcctaaaaacttcagaagagtctgctaacaagataacatctagttgtagaggaagagaagtccatatcttcaaagtgtcaat |
18430262 |
T |
|
| Q |
369 |
gttgtcggcctcatatttaggcagtcaatcagcacatttattgtcttccttc |
420 |
Q |
| |
|
||| || ||||| ||||||| ||| |||| ||| ||| ||| ||||||||| |
|
|
| T |
18430263 |
gttttcagcctcgtatttagccagctaatcggcatattcattctcttccttc |
18430314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 9e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 254 - 422
Target Start/End: Complemental strand, 27545962 - 27545793
Alignment:
| Q |
254 |
aacaacaaaaaactaaagactaagcaacttggtgactaaaaactct-ataggagtcggcgaacaagatagaatctagctgccgaggaggagaggtccata |
352 |
Q |
| |
|
||||||||||||| || |||||||||||| |||| ||||||||| | | ||||||| |||||||||||| ||||||| ||| |||||||||| |||||| |
|
|
| T |
27545962 |
aacaacaaaaaacaaaggactaagcaactcggtgcctaaaaactttcagaggagtcagcgaacaagataaaatctagttgcaaaggaggagagatccata |
27545863 |
T |
|
| Q |
353 |
tcttcaaggtgtcaatgttgtcggcctcatatttaggcagtcaatcagcacatttattgtcttccttcaa |
422 |
Q |
| |
|
||||| | |||||||||||||||| | |||||||| || |||||| |||||| |||| ||||| |||| |
|
|
| T |
27545862 |
tcttcgaagtgtcaatgttgtcggtcccatatttaaccaatcaatcgacacattcattgccttccctcaa |
27545793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 32795205 - 32795308
Alignment:
| Q |
269 |
aagactaagcaacttggtgactaaaaactctataggagtcggcgaacaagatagaatctagctgccgaggaggagaggtccatatcttcaaggtgtcaat |
368 |
Q |
| |
|
|||||||||||||| |||| ||||||||| || |||||||||||||||||||| ||| ||| || ||||| |||| |||||||||||||| | || ||| |
|
|
| T |
32795205 |
aagactaagcaactcggtgcctaaaaactgtagaggagtcggcgaacaagatataatttagttgtggaggaagagatgtccatatcttcaaagcgttaat |
32795304 |
T |
|
| Q |
369 |
gttg |
372 |
Q |
| |
|
|||| |
|
|
| T |
32795305 |
gttg |
32795308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 40071222 - 40071124
Alignment:
| Q |
261 |
aaaaactaaagactaagcaacttggtgactaaaaactctataggagtcggcgaacaagatagaatctagctgccgaggaggagaggtccatatcttcaa |
359 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||||| | |||||||||||||||||||||| ||||| | |||||| ||| || ||||||||||| |
|
|
| T |
40071222 |
aaaaacaaaagactaagcaactaagtgcctaaaaactcctgaagagtcggcgaacaagatagaatatagcttcggaggagaagatgttcatatcttcaa |
40071124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 48089410 - 48089358
Alignment:
| Q |
335 |
gaggaggagaggtccatatcttcaaggtgtcaatgttgtcggcctcatattta |
387 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
48089410 |
gaggaggagaggtgcatatcttcaaagtgtcaatgttgtcagccccatattta |
48089358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 5328077 - 5328036
Alignment:
| Q |
150 |
ataaaatactaaagtgttgcaactaaataagataaatgaccc |
191 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
5328077 |
ataaaagactaaagtgttacaaataaataagataaatgaccc |
5328036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 5328678 - 5328727
Alignment:
| Q |
140 |
aaaaataagaataaaatactaaagtgttgcaactaaataagataaatgac |
189 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
5328678 |
aaaaataaagataaaagactaaagtgttacaagtaaataagataaatgac |
5328727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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