View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2240_low_22 (Length: 326)
Name: NF2240_low_22
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_22 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 35898185 - 35897886
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttg-- |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35898185 |
catcattgaatttgaacacataacctgaagtgtttctcctatcagttaggtctccacaccaatcactatcagagtatcctatgagttcattcacttttta |
35898086 |
T |
|
| Q |
112 |
ctttgagctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcat |
211 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35898085 |
ctttgagctacataagaaaataacagaccaaaatctatggtgccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcat |
35897986 |
T |
|
| Q |
212 |
gcatgaacttgctaattacacccactgagtaacatatatctcgcctgctgtcacacagatatctcagagatcccacaatttgtctgaacattgtggaatc |
311 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35897985 |
gcatgaacttgctaattacaagcactgagtaacatatatctggcctgctgttacatagatatctcagagatcccacaatttgtctgaacattgtggaatc |
35897886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 30380181 - 30379963
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgct |
113 |
Q |
| |
|
|||||||||||||||| || || | || |||| ||| |||||||| || |||||||||||||||||||| ||| | || ||||||||||| | || || |
|
|
| T |
30380181 |
catcattgaatttgaatacgtagtccgatgtgcttcttctatcagttagatctccacaccaatcactatctgagaaacccatgagctcatttaattcact |
30380082 |
T |
|
| Q |
114 |
ttgagctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatgc |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||| || |||| ||||| ||||||||||| | |||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
30380081 |
ttgagctccataaggaaatagcagaccaagatccatggtacccttaatgtatctaaggagtctctttgcagctatcaaatgagatttctttggatcatgc |
30379982 |
T |
|
| Q |
214 |
atgaacttgctaattacac |
232 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
30379981 |
ataaacttgcttattacac |
30379963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 296601 - 296364
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || || | ||||||||||| ||||| || |
|
|
| T |
296601 |
catcattgaatttgaacacataacctgaagtgcttctcctatc---------tccacaccaatcactatctgaatagcatatgagctcatacacttcact |
296511 |
T |
|
| Q |
114 |
ttgagctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatgc |
213 |
Q |
| |
|
| ||||||||||||||||||||||||| | || || | ||| | | |||||||| ||||| || |||||||||||||||| |||||| ||||||||| |
|
|
| T |
296510 |
cttagctccataaggaaataacagaccatattccatagttcctctaacatatctaaggatcctattagcagctatcagatgaggtttcctaggatcatgc |
296411 |
T |
|
| Q |
214 |
atgaacttgctaattacacccactgagtaacatatatctcgcctgct |
260 |
Q |
| |
|
||||| |||||||| |||| |||||||| || |||||| ||||||| |
|
|
| T |
296410 |
atgaatttgctaatcacacttactgagtagcaaatatctggcctgct |
296364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 3461313 - 3461095
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3461313 |
catcattgaatttgaacacataacctgaagtgcttctcctatcagtcaggtctccacaccaatcactatcagagtatcatatgagctcattcactttgct |
3461214 |
T |
|
| Q |
114 |
ttgagctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatgc |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3461213 |
ttaagctccataaggaaataacagaccaaagtctatggcgccctttatgtatctaagaatcctctttgcagctatcatatgagatttccttggatcatgc |
3461114 |
T |
|
| Q |
214 |
atgaacttgctaattacac |
232 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3461113 |
atgaacttgctaattacac |
3461095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 301866 - 301578
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgct |
113 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| | || ||||||||||||||| | || || || |||||||| |||||||||| || |
|
|
| T |
301866 |
catcattgaatttgaacacataatctgaagtgcttctcctatcaattagatctccacaccaatcattgtctgaataacctatgaggtcattcacttcact |
301767 |
T |
|
| Q |
114 |
ttgagctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatgc |
213 |
Q |
| |
|
| ||||||||||||||||||||||||| | || || | ||| ||| |||||||| |||||||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
301766 |
cttagctccataaggaaataacagaccatactccatagttcctcttacatatctaaggatcctcttagcagctatcagatgagtgttcctaggatcatgc |
301667 |
T |
|
| Q |
214 |
atgaacttgctaattacacccactgagtaacatatatctcgcctgctgtcacacagatatctcagagatcccacaatttgtctgaacat |
302 |
Q |
| |
|
||||| |||||||| |||| |||||||| || |||| | | || || | ||| || ||||||| ||||| ||||||| ||||||||| |
|
|
| T |
301666 |
atgaatttgctaatcacacttactgagtagcaaatatttggtctactattacatagttatctcaatgatccaacaatttttctgaacat |
301578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 3461085 - 3461038
Alignment:
| Q |
264 |
acacagatatctcagagatcccacaatttgtctgaacattgtggaatc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3461085 |
acacagatatctcagagatcccacaatttgtctgaacattgtggaatc |
3461038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 38099765 - 38100011
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgct |
113 |
Q |
| |
|
|||||||||| |||| ||||| | |||||||| ||| |||||||| | ||| || ||||||||||||| |||||||| |||| |||||||||||| || |
|
|
| T |
38099765 |
catcattgaacatgaaaacatatcttgaagtgcttcttctatcagttaaatcttcataccaatcactatcggagtatccaatgaactcattcactttact |
38099864 |
T |
|
| Q |
114 |
ttgagctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatgc |
213 |
Q |
| |
|
| | ||||||| ||||| || ||| | || || | ||| || | |||||||||||| ||||| ||||||| | ||||| |||| | | ||||||| |
|
|
| T |
38099865 |
tctattaccataagaaaatagcaatccatattccatagttcctttaacatatctaagaatcatcttttcagctattatatgaggtttcttagtatcatgc |
38099964 |
T |
|
| Q |
214 |
atgaacttgctaattacacccactgagtaacatatatctcgcctgct |
260 |
Q |
| |
|
||||| |||||||| |||| |||||||| || || ||| ||||||| |
|
|
| T |
38099965 |
atgaatttgctaatcacactaactgagtagcaaatgtctggcctgct |
38100011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 50778687 - 50778869
Alignment:
| Q |
18 |
attgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgctttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50778687 |
attgaatttgaacacataacctgaagtgcttctcctatcagtcagatctccacaccaatcactatcagagtatcctatgagctcattcactttgctttga |
50778786 |
T |
|
| Q |
118 |
gctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcagatgagattt |
200 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50778787 |
gctccataaggaaatagcataccaaaatctatggtgccctttatgtatctaagaatcctctttgcagctatcatatgagattt |
50778869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 44536537 - 44536835
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||| || || |||||||||||||||||||||| || |
|
|
| T |
44536537 |
catcattgaatttgaacacataacctgaagtgcttctcctatcaattagatctccacaccaatcactgtctgaatatcctatgagctcattcacttcact |
44536636 |
T |
|
| Q |
114 |
ttgagctccataaggaaataacagaccaaagtctatggctccct-ttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatg |
212 |
Q |
| |
|
| ||||||||||||||||||||| ||| | || || | ||||| ||| |||||||| |||||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
44536637 |
cttagctccataaggaaataacaggccatactccatag-tccctcttacatatctaaggatcctcttagcagctatcagatgaggtttcctaggatcatg |
44536735 |
T |
|
| Q |
213 |
catgaacttgctaattacacccactgagtaacatatatctcgcctgctgtcacacagatatctcagagatcccacaatttgtctgaacattgtggaatct |
312 |
Q |
| |
|
|||||| |||||||| |||| |||||||| || ||||| | || || | ||| || ||||||| ||||| ||||||||||| ||||| || |||||| |
|
|
| T |
44536736 |
catgaatttgctaatcacacttactgagtagcaaatatcgggtctactattacataggtatctcaatgatccaacaatttgtctaaacatggttgaatct |
44536835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 50778880 - 50778937
Alignment:
| Q |
254 |
gcctgctgtcacacagatatctcagagatcccacaatttgtctgaacattgtggaatc |
311 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50778880 |
gcctgctgttacatagatatctcagagatcccacaatttgtctgaacagtgtggaatc |
50778937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 48850 - 48557
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgct |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||| | || ||||||||||||||||| || || || ||||||||||||||||||| || |
|
|
| T |
48850 |
catcattgaatttgaacacataacttgaagtgtttctcctatcaattagatctccacaccaatcactgtctgaataacctatgagctcattcacttcact |
48751 |
T |
|
| Q |
114 |
ttgagctccataaggaaataacagaccaaagtctatggctccct-ttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatg |
212 |
Q |
| |
|
| ||||||||||||||||||||||||| | || || | ||||| ||| |||| ||| |||||||| |||||||||||||||| |||||| || ||||| |
|
|
| T |
48750 |
cttagctccataaggaaataacagaccatactccatag-tccctcttacatatccaaggatcctcttagcagctatcagatgaggtttcctagggtcatg |
48652 |
T |
|
| Q |
213 |
catgaacttgctaattacacccactgagtaacatatatctcgcctgctgtcacacagatatctcagagatcccacaatttgtctgaacattgtgg |
307 |
Q |
| |
|
|||||| |||||||| |||| ||| |||| || |||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48651 |
catgaatttgctaatcacacttactaagtagcaaatatctggcctgctgttacatagatatcttagagatcccacaatttgtctgaacattgtgg |
48557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 28248688 - 28248395
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgct |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||| | || ||||||||||||||||| || || || ||||||||||||||||||| || |
|
|
| T |
28248688 |
catcattgaatttgaacacataacttgaagtgtttctcctatcaattagatctccacaccaatcactgtctgaataacctatgagctcattcacttcact |
28248589 |
T |
|
| Q |
114 |
ttgagctccataaggaaataacagaccaaagtctatggctccct-ttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatg |
212 |
Q |
| |
|
| ||||||||||||||||||||||||| | || || | ||||| ||| |||| ||| |||||||| |||||||||||||||| |||||| || ||||| |
|
|
| T |
28248588 |
cttagctccataaggaaataacagaccatactccatag-tccctcttacatatccaaggatcctcttagcagctatcagatgaggtttcctagggtcatg |
28248490 |
T |
|
| Q |
213 |
catgaacttgctaattacacccactgagtaacatatatctcgcctgctgtcacacagatatctcagagatcccacaatttgtctgaacattgtgg |
307 |
Q |
| |
|
|||||| |||||||| |||| ||| |||| || |||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28248489 |
catgaatttgctaatcacacttactaagtagcaaatatctggcctgctgttacatagatatcttagagatcccacaatttgtctgaacattgtgg |
28248395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 5721991 - 5722289
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgct |
113 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| | || ||||||||||||||||| || || || ||||||||||||||||||| | |
|
|
| T |
5721991 |
catcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccacaccaatcactgtctgaataacctatgagctcattcacttcaat |
5722090 |
T |
|
| Q |
114 |
ttgagctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatgc |
213 |
Q |
| |
|
| ||||||||||||||||||||||||| | || | | ||| ||| |||||||| ||||||| |||||||||||||||| ||| || ||||||||| |
|
|
| T |
5722091 |
cttagctccataaggaaataacagaccatactccctagttcctcttacatatctaaggctcctcttagcagctatcagatgaggttttctaggatcatgc |
5722190 |
T |
|
| Q |
214 |
atgaacttgctaattacacccactgagtaacatatatctcgcctgctgtcacacagatatctcagagatcccacaatttgtctgaacattgtggaatct |
312 |
Q |
| |
|
||||| || ||||| |||| |||||||| || |||||| | || || | ||| || ||||||| ||||| ||||||||||| ||||| || |||||| |
|
|
| T |
5722191 |
atgaatttcctaatcacacttactgagtagcaaatatctggtctactattacataggtatctcaatgatccaacaatttgtctaaacatggttgaatct |
5722289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 9880814 - 9880603
Alignment:
| Q |
15 |
atcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgctt |
114 |
Q |
| |
|
||||||||| ||||| ||||| ||||| |||| ||| || ||||||| ||||||||||||||||| |||||||| ||||| | |||||||| || ||| |
|
|
| T |
9880814 |
atcattgaacttgaaaacatagcctgaggtgcttcttctgtcagtcaaatctccacaccaatcactgtcagagtaacctataaactcattcaattcactt |
9880715 |
T |
|
| Q |
115 |
tgagctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatgca |
214 |
Q |
| |
|
| | ||||| ||| | || || |||||| || || ||||| ||||||||||| || ||||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
9880714 |
ttacttccattagggattagcaaaccaaattccatattacccttgatgtatctaaggattctcttagcagctatcaaatgagatttccatggatcatgca |
9880615 |
T |
|
| Q |
215 |
tgaacttgctaa |
226 |
Q |
| |
|
| || ||||||| |
|
|
| T |
9880614 |
taaatttgctaa |
9880603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 50935447 - 50935359
Alignment:
| Q |
52 |
ctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgctttgagctccataaggaaataacagacc |
140 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || || ||||||||||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
50935447 |
ctatcagttaggtctccacaccaatcactatctgaataacctatgagctcattcacttcactcttggctccataaggaaataacagacc |
50935359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 242
Target Start/End: Complemental strand, 26904815 - 26904639
Alignment:
| Q |
66 |
tccacaccaatcactatcagagtatcctatgagctcattcactttgctttgagctccataaggaaataacagaccaaagtctatggctccctttatgtat |
165 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| |||||||| | | |||| | ||||| | ||||| || |||| | || || | ||| || | ||| |
|
|
| T |
26904815 |
tccacaccaatcactatctgagtatccaatgaactcattcattctacttttactaccataggaaaatagcaaaccatattccatagttcctttaacatat |
26904716 |
T |
|
| Q |
166 |
ctaagaatcctctttgcagctatcagatgagatttccttggatcatgcatgaacttgctaattacacccactgagta |
242 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||| |||||| |||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
26904715 |
ctaagaatcctcttagcaactatcacatgaggtttcctaggatcatgcatgaatttgctaatcacactaactgagta |
26904639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 18645761 - 18646059
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgct |
113 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| | || ||||||||||||||||| || || || ||||||||||||||||||| | |
|
|
| T |
18645761 |
catcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccacaccaatcactgtctgaataacctatgagctcattcacttcaat |
18645860 |
T |
|
| Q |
114 |
ttgagctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatgc |
213 |
Q |
| |
|
| ||||||||||||||||||||||||| | || | | ||| ||| |||||||| ||||||| |||||||||||||||| ||| || ||||||||| |
|
|
| T |
18645861 |
cttagctccataaggaaataacagaccatactccctagttcctcttacatatctaaggctcctcttagcagctatcagatgaggttttctaggatcatgc |
18645960 |
T |
|
| Q |
214 |
atgaacttgctaattacacccactgagtaacatatatctcgcctgctgtcacacagatatctcagagatcccacaatttgtctgaacattgtggaatct |
312 |
Q |
| |
|
||||| || ||||| |||| |||||||| || |||||| | || || | ||| || ||||||| ||||| ||||||||||| ||||| || |||||| |
|
|
| T |
18645961 |
atgaatttcctaatcacacttactgagtagcaaatatctggtctactattacataggtatctcaatgatccaacaatttgtctaaacatggttgaatct |
18646059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 34982877 - 34982647
Alignment:
| Q |
15 |
atcattgaatttgaacacataacctgaagtgcctctcctatcagtcaggtctccacaccaatcactatcagagtatcctatgagctcattcactttgctt |
114 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| | ||||| || || |||||||||||||||||||| ||||| |||||||||||||| |||| ||| |
|
|
| T |
34982877 |
atcattgaatttgaacacatagcctgatgtgctctttctatcggttagatctccacaccaatcactatctgagtaacctatgagctcattaacttcactt |
34982778 |
T |
|
| Q |
115 |
tgagctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatgca |
214 |
Q |
| |
|
| |||||||| || |||| || |||||| || ||||| |||| |||||| || | || |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34982777 |
ttagctccattggggaatagcaaaccaaattccatggcaccctcgatgtatttagggattctctttgcagctatcaaatgagatttccttggatcatgca |
34982678 |
T |
|
| Q |
215 |
tgaacttgctaattacacccactgagtaaca |
245 |
Q |
| |
|
| |||||||||||||||| ||||| ||||| |
|
|
| T |
34982677 |
taaacttgctaattacactaactgaataaca |
34982647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 312
Target Start/End: Original strand, 37787298 - 37787518
Alignment:
| Q |
92 |
ctatgagctcattcactttgctttgagctccataaggaaataacagaccaaagtctatggctccctttatgtatctaagaatcctctttgcagctatcag |
191 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||||||||||||||||| | | | | ||| ||| |||||||| |||||||| ||||||||||| |
|
|
| T |
37787298 |
ctatgagctcattcacttcacgcttagctccataaggaaataacagaccatacttcctagttcctcttaaatatctaaggatcctcttagcagctatcag |
37787397 |
T |
|
| Q |
192 |
atgagatttccttggatcatgcatgaacttgctaattacacccactgagtaacatatatctcgcctgctgtcacacagatatctcagagatcccacaatt |
291 |
Q |
| |
|
||||| |||||| ||||||||||||| || ||||| |||| |||||||| || |||||| | || || | ||| || ||||||| ||||| |||||| |
|
|
| T |
37787398 |
atgaggtttcctaagatcatgcatgaatttcctaatcacacttactgagtagcaaatatctggtctactattacataggtatctcaatgatccaacaatt |
37787497 |
T |
|
| Q |
292 |
tgtctgaacattgtggaatct |
312 |
Q |
| |
|
| ||| ||||| || |||||| |
|
|
| T |
37787498 |
tttctaaacatggttgaatct |
37787518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 37787229 - 37787272
Alignment:
| Q |
14 |
catcattgaatttgaacacataacctgaagtgcctctcctatca |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37787229 |
catcattgaatttgaacacataacctgaagtgtttctcctatca |
37787272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 14233520 - 14233442
Alignment:
| Q |
154 |
ccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatgcatgaacttgctaattacac |
232 |
Q |
| |
|
||||| ||||| ||||| || ||||| ||| |||| | |||||||||||||||||||||||| || || |||||||||| |
|
|
| T |
14233520 |
cccttgatgtaactaaggattctcttagcaactataaaatgagatttccttggatcatgcataaattttctaattacac |
14233442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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