View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_low_23 (Length: 312)
Name: NF2240_low_23
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_23 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 28 - 304
Target Start/End: Original strand, 8168679 - 8168955
Alignment:
| Q |
28 |
atgatctattttgttttatcatcactcttctaattatgtatgtgtggtatatagaggagttcctttgaagtatatatctcctctttgaagtcagaaaacc |
127 |
Q |
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| T |
8168679 |
atgatctattttgttttatcatcactcttctgattatgtatgtgtgttatatagtggagttcctttgaagtatatatctcctctttgaagtcagaaaacc |
8168778 |
T |
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| Q |
128 |
gcaaagaagaagtttttatgtatacagaagttaaagaaacattgctaatgcacctttaagataagcagaaaactggcctcttgaagaacttaacatttta |
227 |
Q |
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| T |
8168779 |
gcaaagaagaagtttttatgtatacagaagttaaagaaacattgctaatgcacctttaagataagcagaaaactggcctcttgaagaacttaacatttta |
8168878 |
T |
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| Q |
228 |
gcgcagcaatgtttgtttcttgcaattcaagcaatcataacaaaggatgaatttgagagtaagaagaagagagaatg |
304 |
Q |
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| T |
8168879 |
gcgcagctatgtttgtttcttgcaattcaagcaatcataacaatggatgaatttgagagtaagaagaagagagaatg |
8168955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 37566541 - 37566599
Alignment:
| Q |
37 |
tttgttttatcatcactcttctaattatgtatgtgtggtatatagaggagttcctttga |
95 |
Q |
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| T |
37566541 |
tttgtttaatcatcacacttctaattgtgtatttgtggtatatagtggagttcctttga |
37566599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 34741287 - 34741374
Alignment:
| Q |
225 |
ttagcgcagcaatgtttgtttcttgcaattcaagcaatcataacaaaggatgaatttgagagtaagaagaagagagaatgagaaaggt |
312 |
Q |
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| T |
34741287 |
ttagcgcagcaatgcttgtttcttgcaattcaagcaatcataacaatggatgaaattgagagtaggaagaagagagaatgcgaaaggt |
34741374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 29149934 - 29150010
Alignment:
| Q |
236 |
atgtttgtttcttgcaattcaagcaatcataacaaaggatgaatttgagagtaagaagaagagagaatgagaaaggt |
312 |
Q |
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| T |
29149934 |
atgtttgtttcttgcaattcaagcaaccgtaacaatcgatgaaattgagagtaagaagaagagagaatgaggaaggt |
29150010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 36020101 - 36020025
Alignment:
| Q |
236 |
atgtttgtttcttgcaattcaagcaatcataacaaaggatgaatttgagagtaagaagaagagagaatgagaaaggt |
312 |
Q |
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| T |
36020101 |
atgtttgtttcttgtaattcaaacaatcataacaatggatgaaattgagagtataaacaagatagaatgaggaaggt |
36020025 |
T |
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