View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_low_3 (Length: 672)
Name: NF2240_low_3
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 379
Target Start/End: Complemental strand, 36952597 - 36952231
Alignment:
| Q |
13 |
atggacatcatgtactcggccgcatccaatttgaacatttctctcaaattcctggaaatatatgaaatcacataaagaatatgtgcttataatcataact |
112 |
Q |
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| T |
36952597 |
atggacatcatgtactcggccgcatccaatttgaacatttctctcaaattcctggaaatatatgaaatcacataaagaatatgtgcttataatcataact |
36952498 |
T |
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| Q |
113 |
ctgactaagaactctaatacaccacaataatcataaaatcatattatatcaagaacctatatacatgttattctgataatgaatacctgaagaccatagg |
212 |
Q |
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| T |
36952497 |
ttgactaagaactctaatacaccacaataatcataaaatcatattatatcaagaacctatatacatgttattctgataatgaatacctgaagaccatagg |
36952398 |
T |
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| Q |
213 |
gcaataatctttccagtagaagtctacagaacagtgtggaggagtcaattgtgaaccctccttaggaaagtacatccttattctagctctttctccaaaa |
312 |
Q |
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| T |
36952397 |
gcaataatctttccagtagaagtctacagaacagtgtggaggagtcaattgtgaaccctccttaggaaagtacatccttattctagctctttctccaaaa |
36952298 |
T |
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| Q |
313 |
tcagacgaccgaacttcacgtgcaggaactggtgtaatttttcctacagtgtacctgagaattgagc |
379 |
Q |
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| T |
36952297 |
tcagacgaccgaacttcacgtgcaggaactggtgtaatttttcctacagtgtacctgagaattgagc |
36952231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 434 - 672
Target Start/End: Complemental strand, 36952176 - 36951938
Alignment:
| Q |
434 |
ttcaagtttagaacatttgaaagaatgctgataatactagcaaccatgaatactagacatgttttttgaaaatattattagagatcaaataatttacctg |
533 |
Q |
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| T |
36952176 |
ttcaagtttagaacatttgaaagaatgctgataatactagcaaccatgaatactagacatatttttcgaaaatattattagagatcaaataatttacctg |
36952077 |
T |
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| Q |
534 |
atgccaagctgcaaattaagcttcagataatagcttcggcggttttggatagtgcctataaacgaactcttttttacttgcttcatactaaatttacttt |
633 |
Q |
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| T |
36952076 |
atgccaagctgcaaattaagcttcagataatagcttcggcggttttggatagtgcctataaacgaactcttttttacttgcttcatactaaatttacttt |
36951977 |
T |
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| Q |
634 |
gccttttgttcttattatgcggtttttctgaacagtcac |
672 |
Q |
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| T |
36951976 |
gccttttgttcttattatgcggtttttctgaacactcac |
36951938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 569
Target Start/End: Complemental strand, 39849295 - 39849241
Alignment:
| Q |
515 |
agatcaaataatttacctgatgccaagctgcaaattaagcttcagataatagctt |
569 |
Q |
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| T |
39849295 |
agatcaaataatttacctgatgccaagttgcagattaagattcatataatagctt |
39849241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 38453271 - 38453318
Alignment:
| Q |
517 |
atcaaataatttacctgatgccaagctgcaaattaagcttcagataat |
564 |
Q |
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| T |
38453271 |
atcaaataatttacctgatgccaagttgcaaattaagagtcagataat |
38453318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 651
Target Start/End: Original strand, 34547797 - 34547847
Alignment:
| Q |
600 |
ctcttttttacttgcttcatactaaatttactttgccttttgttcttattat |
651 |
Q |
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| T |
34547797 |
ctcttctttacttgcttcacactaaattga-tttgccttttgttcttattat |
34547847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 569
Target Start/End: Complemental strand, 38633571 - 38633517
Alignment:
| Q |
515 |
agatcaaataatttacctgatgccaagctgcaaattaagcttcagataatagctt |
569 |
Q |
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||||||| ||||||||||| ||||||| |||| |||||| |||||||| |||||| |
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| T |
38633571 |
agatcaagtaatttacctgttgccaagttgcagattaagattcagatactagctt |
38633517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 521 - 569
Target Start/End: Original strand, 7045418 - 7045465
Alignment:
| Q |
521 |
aataatttacctgatgccaagctgcaaattaagcttcagataatagctt |
569 |
Q |
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| T |
7045418 |
aatattttacctgatgc-aagttgcaaattaagattcagataatagctt |
7045465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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