View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_low_30 (Length: 250)
Name: NF2240_low_30
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 35159308 - 35159063
Alignment:
| Q |
1 |
tgaaagatgttcacataacctttagctggctacatccagtcttcctcgatcatcataccaaaaccttgcagttcgaaagtgaaccagggtcgaaggctgt |
100 |
Q |
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| T |
35159308 |
tgaaagatgttcacataacctttagctggctacatccagtcttcctcgatcatcataccaaaaccttgcagttcgaaagtgaaccagggtcgaaggccgt |
35159209 |
T |
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| Q |
101 |
cagaaatggacacatgactaggtgtatcaaaacttacctactttacctatttggatgcactatctttaccgacaaggtcaacaatatgtcgatgtgatgt |
200 |
Q |
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| T |
35159208 |
cagaaatggacacatgactaggtgtatcaaaacttacctactttacctatttggatgcactatctttaccgacaaggtcaacaatatgtcgatgtgatgt |
35159109 |
T |
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| Q |
201 |
acctaaactatttttgagaattcactataattaatctgtgctccta |
246 |
Q |
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| T |
35159108 |
acctaaactatttttgagaattcactataattaatcagtggtccta |
35159063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 42117108 - 42117023
Alignment:
| Q |
42 |
ttcctcgatcatcataccaaaaccttgcagttcgaaagtgaaccagggtcgaaggctgtcagaaatggacacatgactaggtgtat |
127 |
Q |
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| T |
42117108 |
ttcctcgaccatcattccaaagccttggaacttgaaagtgaaccagggatgaaggctatcagagatgggcatatgactaagtgtat |
42117023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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