View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_low_32 (Length: 238)
Name: NF2240_low_32
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_32 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 46843913 - 46844133
Alignment:
| Q |
18 |
ggtccaaacccaagaacaactcatatatttgataattgcataattgagagtagttgttttgatattggatgctctgctgttaaagagaatgggtattgtt |
117 |
Q |
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| T |
46843913 |
ggtccaaacccaagaacaactcatatatttgataattgcataattgagagtagttgttttgatattggatgctctgctgttaaagagaatgggtattgtt |
46844012 |
T |
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| Q |
118 |
ttcctcaccctaccagctatccctctgagagctttctgagtgtatgttttcactgcaagaagaatcttgagcagggtaaagacatctacatgtacaggta |
217 |
Q |
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| T |
46844013 |
ttcctcaccctaccagctatccctctgagagctttctgagtgtatgttttcactgcaagaagaatcttgagcagggtaaagacatctacatgtacaggta |
46844112 |
T |
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| Q |
218 |
attgcttattcttttaccccc |
238 |
Q |
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| T |
46844113 |
attgcttattcttttaccccc |
46844133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 46847912 - 46848029
Alignment:
| Q |
117 |
tttcctcaccctaccagctatccctctgagagctttctgagtgtatgttttcactgcaagaagaatcttgagcagggtaaagacatctacatgtacaggt |
216 |
Q |
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| T |
46847912 |
tttcctcatcctattagatatccctctgaaatctttttgagtatatgtttccaatgcaagaagagtctt---cagggaaaagatatctacatgtacaggt |
46848008 |
T |
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| Q |
217 |
aattgcttattcttttacccc |
237 |
Q |
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| T |
46848009 |
aattgcttattctttaacccc |
46848029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 31876133 - 31876167
Alignment:
| Q |
21 |
ccaaacccaagaacaactcatatatttgataattg |
55 |
Q |
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| T |
31876133 |
ccaaacccaaaaacaactcatatatttgataattg |
31876167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 28448 - 28627
Alignment:
| Q |
21 |
ccaaacccaagaacaactcatatatttgataattgcataattgagagtagttgttttgatattggatgctctg---ctgttaaagagaatgggtattgtt |
117 |
Q |
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| T |
28448 |
ccaaaaccaagaacaactcaaatatatgataactgtataattaagagtaattgttttgatgtt-gattatctgcttctgttaaaaagaatgtgca-tgtt |
28545 |
T |
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| Q |
118 |
ttcctcaccctaccagctatccctctgagagctttctgagtgtatgttttcactgcaagaagaatcttgagcagggtaaaga |
199 |
Q |
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| T |
28546 |
ttcctcatcttactagttatccttttgagaactatttgtgtatctgtttttactacgagaagaatcttgagcaggataaaga |
28627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 28230 - 28151
Alignment:
| Q |
82 |
ttggatgctctgct---gttaaagagaatgggtattgttttcctcaccctaccagctatccctctgagagctttctgagt |
158 |
Q |
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| T |
28230 |
ttggatgctctgcttctgttaaagaaaatgggtatggttttcttcatcgtactagtcatccctctgagagctttttgagt |
28151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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