View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_low_35 (Length: 226)
Name: NF2240_low_35
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 8479446 - 8479647
Alignment:
| Q |
17 |
aaattatagatgcaaaagtcacaacttcataggaaaatgttagtggtgacactgccgtatcacatcagcagccatcattagatgttatggcattggaaca |
116 |
Q |
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||||| |||||||| ||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8479446 |
aaattgtagatgcagaagtcgcaactccacaggaaaatgtaagtggtgacactgccgtatcacatcagcagccatcattagatgttatggcattggaaca |
8479545 |
T |
|
| Q |
117 |
ttcagccaatgtgcaatccagaccagcagagacagaaactaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcatttcag |
216 |
Q |
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|||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8479546 |
ttcagcaaatgtgcaatccagaccagcagagacagaagcgaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcag |
8479645 |
T |
|
| Q |
217 |
tc |
218 |
Q |
| |
|
|| |
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|
| T |
8479646 |
tc |
8479647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 41067812 - 41068013
Alignment:
| Q |
17 |
aaattatagatgcaaaagtcacaacttcataggaaaatgttagtggtgacactgccgtatcacatcagcagccatcattagatgttatggcattggaaca |
116 |
Q |
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|||||||||||||| ||||| ||||| || |||||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41067812 |
aaattatagatgcagaagtcgcaactccacaggaaaatgtaagtggtgacaatgccgtttcacatcagtagccatcattagatgttatggcattggaaca |
41067911 |
T |
|
| Q |
117 |
ttcagccaatgtgcaatccagaccagcagagacagaaactaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcatttcag |
216 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
41067912 |
ttcagctaatgtgcaatccagaccagcagagacagaagctaattcaagtgcagcagctaatgagtttactgctgatcaggtgcgtgaagtttcaattcag |
41068011 |
T |
|
| Q |
217 |
tc |
218 |
Q |
| |
|
|| |
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|
| T |
41068012 |
tc |
41068013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 10033386 - 10033185
Alignment:
| Q |
17 |
aaattatagatgcaaaagtcacaacttcataggaaaatgttagtggtgacactgccgtatcacatcagcagccatcattagatgttatggcattggaaca |
116 |
Q |
| |
|
|||||||||||||| ||||| ||||| || |||||||||| ||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10033386 |
aaattatagatgcagaagtcgcaactccacaggaaaatgtaagtggggacactgtcgtatcacatcagcagacatcattagatgttatggcattggaaca |
10033287 |
T |
|
| Q |
117 |
ttcagccaatgtgcaatccagaccagcagagacagaaactaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcatttcag |
216 |
Q |
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|||| | ||||||||||||||| || |||| ||| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
10033286 |
ttcaacaaatgtgcaatccagatcaacagaaacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcag |
10033187 |
T |
|
| Q |
217 |
tc |
218 |
Q |
| |
|
|| |
|
|
| T |
10033186 |
tc |
10033185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 23 - 215
Target Start/End: Complemental strand, 19936748 - 19936556
Alignment:
| Q |
23 |
tagatgcaaaagtcacaacttcataggaaaatgttagtggtgacactgccgtatcacatcagcagccatcattagatgttatggcattggaacattcagc |
122 |
Q |
| |
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|||| ||| ||||| ||||| || | |||||||| || ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |
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| T |
19936748 |
tagacgcagaagtcgcaactccacaagaaaatgtaagcggtgacaatgccgtatcacattagcagccatcattagctgttatggcattggaacagtcagc |
19936649 |
T |
|
| Q |
123 |
caatgtgcaatccagaccagcagagacagaaactaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcatttca |
215 |
Q |
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|||||||||||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19936648 |
aaatgtgcaatccagaccagcagaggcaaaagcgaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattca |
19936556 |
T |
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