View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_low_36 (Length: 223)
Name: NF2240_low_36
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 29014325 - 29014117
Alignment:
| Q |
1 |
ccatcatcatcaggaacaactcctaggcagaggggacctccaggtttcgcaataggagcaggtgctggagcatttgcacagctggtgctgttatgtttgg |
100 |
Q |
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| T |
29014325 |
ccatcatcatcaggaacagctcctaggcagaggggacctccaggtttcgcaataggagcaggtgctggagcatttgtgcagctggtgctgttatgtttgg |
29014226 |
T |
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| Q |
101 |
tgataacttcatgtcaggattttatgtgccttcaggttttggaaatccttctcttaccattggaactgatcctcttttctaaaaaatcaattaagcaata |
200 |
Q |
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| T |
29014225 |
ta-----ttcatatcaggattttatgtgccttcaggttttggaaatccttctcttaccattggaactgatcctcttttctaaaaaatcaattaagcaata |
29014131 |
T |
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| Q |
201 |
ttacctttgcttct |
214 |
Q |
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||||| |||||||| |
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| T |
29014130 |
ttaccattgcttct |
29014117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 29011003 - 29010869
Alignment:
| Q |
1 |
ccatcatcatcaggaacaactcctaggcagaggggacctccaggtttcgcaataggagcaggtgctggagcatttgcacagctggtgctgttatgtttgg |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
29011003 |
ccatcatcatcaggaacagctcctaggcagaggggacctccaggatttgcaatgggagccggtgctggagcattagca--gctggtgctgttatgtttgg |
29010906 |
T |
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| Q |
101 |
tgataacttcatgtcaggattttatgtgccttcaggt |
137 |
Q |
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| T |
29010905 |
tgataacttcatgtcaggatttgatgtgccttcaggt |
29010869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 29010843 - 29010792
Alignment:
| Q |
154 |
ttaccattggaactgatcctcttttctaaaaaatcaattaagcaatattacc |
205 |
Q |
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||||| ||| |||||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
29010843 |
ttacctttgcaactgatcctcttttctaaacaatcaattaagaaatcttacc |
29010792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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