View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2240_low_6 (Length: 535)
Name: NF2240_low_6
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2240_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 120 - 527
Target Start/End: Original strand, 48429251 - 48429658
Alignment:
| Q |
120 |
attacgcttggttgaaaagatttaagcactccacatgacactatgctagtttagtgaagaaccacctcaatgccacaacttcaacccagccaaaaacaat |
219 |
Q |
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| T |
48429251 |
attacgcttggttgaaaagatttaagcactccacatgacactatgctagtttagtgaagaaccacctcaatgccacaacttcaacccagccaaaaacaat |
48429350 |
T |
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| Q |
220 |
gtgtaaagagaaagataaatgtgtcttgctgattgttcttcacaatgaagtcacctaactaaaaaatagtcattacaaaaaacttttaacatctcaatta |
319 |
Q |
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| T |
48429351 |
gtgtaaagagaaagataaatgtgtcttgctgattgttcttcacaatgaagtcacctaactaaaaaatagtcattacaaaaaacttttaacaactcaatta |
48429450 |
T |
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| Q |
320 |
aagtatgtacagattttatttcggtacatattttatcagttcttcattgctaggtgacgacataaaattaaatcaatcaagaaaattttaaaaactggat |
419 |
Q |
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| T |
48429451 |
aagtatgtacatattttatttcggtacatattttatcagttcttcattgctaggtgacgacataaaattaaatcaatcaagaaaattttaaaaactggat |
48429550 |
T |
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| Q |
420 |
acaactaaggaaactgtttgactcaaatataaactaataaataatcaacttcatcttgcatctgaggctgcatagttcgtctcattttcatattctgtaa |
519 |
Q |
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| T |
48429551 |
acaactaaggaaactgtttgactcaaatataaactaataaataatcaacttcatcttgcatctgaggctgcatagttcgtctcattttcatattctgtaa |
48429650 |
T |
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| Q |
520 |
agtataat |
527 |
Q |
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| T |
48429651 |
actataat |
48429658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 48422093 - 48422193
Alignment:
| Q |
1 |
ttgatttaggagcaacttcaccgactccgtatttctataaaaatcacac--aaaaaatgtgttatgttcgaaaatggacgtctgaatagaacaaagaaaa |
98 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48422093 |
ttgatttaggagcaacttcaccaactccgtatttctataaaaatcacacataaataatgtgttatgttcgaaaatggacgtctgaatagaacaaaaaaaa |
48422192 |
T |
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| Q |
99 |
a |
99 |
Q |
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| T |
48422193 |
a |
48422193 |
T |
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Back To:
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