View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2240_low_8 (Length: 513)

Name: NF2240_low_8
Description: NF2240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2240_low_8
NF2240_low_8
[»] chr6 (30 HSPs)
chr6 (4-343)||(4835368-4835707)
chr6 (423-496)||(4835225-4835298)
chr6 (140-199)||(4299318-4299377)
chr6 (140-199)||(4514618-4514677)
chr6 (140-198)||(4259652-4259710)
chr6 (140-199)||(3172317-3172376)
chr6 (140-199)||(4256121-4256180)
chr6 (140-198)||(4461699-4461757)
chr6 (140-202)||(4598747-4598809)
chr6 (140-199)||(4266663-4266722)
chr6 (140-194)||(4626527-4626581)
chr6 (140-193)||(4564287-4564340)
chr6 (140-199)||(4458171-4458230)
chr6 (140-199)||(4516897-4516956)
chr6 (148-199)||(4568628-4568679)
chr6 (140-199)||(4622716-4622775)
chr6 (140-194)||(4489857-4489911)
chr6 (140-181)||(4481269-4481310)
chr6 (140-181)||(4561080-4561121)
chr6 (140-196)||(4470379-4470435)
chr6 (140-195)||(4503898-4503953)
chr6 (140-195)||(4574884-4574939)
chr6 (255-310)||(4626829-4626883)
chr6 (266-315)||(4266358-4266406)
chr6 (255-316)||(4593112-4593172)
chr6 (28-140)||(4829206-4829319)
chr6 (273-317)||(4506753-4506796)
chr6 (273-317)||(4514314-4514357)
chr6 (273-317)||(4517217-4517260)
chr6 (288-316)||(4571882-4571910)
[»] chr7 (1 HSPs)
chr7 (140-199)||(3086996-3087055)
[»] chr5 (2 HSPs)
chr5 (140-199)||(24103575-24103634)
chr5 (266-314)||(24103891-24103938)
[»] scaffold0477 (1 HSPs)
scaffold0477 (142-194)||(4188-4240)
[»] scaffold0288 (2 HSPs)
scaffold0288 (144-191)||(3224-3271)
scaffold0288 (255-310)||(2918-2972)
[»] scaffold0199 (1 HSPs)
scaffold0199 (140-194)||(39-93)
[»] chr8 (1 HSPs)
chr8 (140-194)||(1674802-1674856)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 4 - 343
Target Start/End: Complemental strand, 4835707 - 4835368
Alignment:
Q  4 gatgtcgaagaatatgttatacaactgacatagtatttgtatctgtcaatacaccaacgaaaacttgcgtctcaaagttggaaaagcggcaaatttgact 103  Q
    |||||| || || |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||| |||||||||| |||| |||||||     
T  4835707 gatgtcaaaaaacatgttatacagctgacatagtgtttgtatctgtcaatacaccaacaaaaacttgcgcctcaatgttggaaaagtggcagatttgacg 4835608  T
Q  104 tattgggaaagtgcggctcagatgattgccgatgtgttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaaatga 203  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4835607 tattgggaaagtgcaactcagatgattgccgatgtgttcaagccattcaagacattttgtatcttccttccaaagatcggaacctaaagatgccaaatga 4835508  T
Q  204 ggagaaagggaccatacactagatagagcattcaatgatatattttagcatgaatacaatctactttgttgtctaaatatctcatttgtcagataactct 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4835507 ggagaaagggaccatacactagatagagcattcaatgatatattttagcatgaatacaatctactttgttgtctaaatatctcatttgtctgataactct 4835408  T
Q  304 catctgcatatcattatattaagaataaaaccatcattat 343  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4835407 catctgcatatcattatattaagaataaaaccatcattat 4835368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 423 - 496
Target Start/End: Complemental strand, 4835298 - 4835225
Alignment:
Q  423 ctacattgtatggaaatgtcatccacttcagaaaagagaattgactaactttttcaagtgaatgcaaaatacat 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4835298 ctacattgtatggaaatgtcatccacttcagaaaagagaattgactaactttttcaagtgaatgcaaaatacat 4835225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 4299377 - 4299318
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 199  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  4299377 ttcaagccattcaagacatttggtatcttctttccaaagattggaacctaaagattccaa 4299318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 4514677 - 4514618
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 199  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  4514677 ttcaagccattcaagacatttagtatcttctttccaaagattggaacctaaagattccaa 4514618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 4259710 - 4259652
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgcca 198  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||    
T  4259710 ttcaagccattcaagacatttggtatcttctttccaaagattggaacctaacgatgcca 4259652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 3172317 - 3172376
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 199  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||    
T  3172317 ttcaagccattcaagacatttagtatcttctttccaaagattagaatctaaagatgccaa 3172376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 4256180 - 4256121
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 199  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||    
T  4256180 ttcaagccattcaagacacttggtatcttctttccaaagattggaacctaacgatgccaa 4256121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 4461699 - 4461757
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgcca 198  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||  |||||||||||    
T  4461699 ttcaagccattcaagacatttagtatcttctttccaaagattggaatttaaagatgcca 4461757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 4598747 - 4598809
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaaatg 202  Q
    ||||||||| |||||||| || |||||||| ||||||||||||| ||||||||||||||||||    
T  4598747 ttcaagccagtcaagacacttggtatcttctttccaaagattggtacctaaagatgccaaatg 4598809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 4266722 - 4266663
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 199  Q
    ||||||||| ||||||||||| |||||||| |||||||||||||||  ||||||||||||    
T  4266722 ttcaagccactcaagacatttagtatcttctttccaaagattggaatttaaagatgccaa 4266663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 4626527 - 4626581
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagat 194  Q
    |||||||||||||||||| || || ||||| ||||||||||||||||||||||||    
T  4626527 ttcaagccattcaagacaattggtgtcttctttccaaagattggaacctaaagat 4626581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 4564287 - 4564340
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaaga 193  Q
    |||||||||||||||||| || |||||||| |||||||| ||||||||||||||    
T  4564287 ttcaagccattcaagacacttagtatcttctttccaaaggttggaacctaaaga 4564340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 4458171 - 4458230
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 199  Q
    ||||||||| ||||||||||| |||| ||| |||||||||||||||  ||||||||||||    
T  4458171 ttcaagccactcaagacatttagtatattctttccaaagattggaatttaaagatgccaa 4458230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 4516897 - 4516956
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 199  Q
    |||||||||||||||||||||  ||||||| ||||||||||| ||||||| ||| |||||    
T  4516897 ttcaagccattcaagacatttcatatcttctttccaaagattagaacctatagaagccaa 4516956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 4568628 - 4568679
Alignment:
Q  148 attcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 199  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||| |||||    
T  4568628 attcaagacatttcatatcttctttccaaagattggaacctaaagaagccaa 4568679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 4622716 - 4622775
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 199  Q
    ||||||||| |||||||| ||  ||||||| ||||||||||||||||||| |||||||||    
T  4622716 ttcaagccactcaagacacttgatatcttctttccaaagattggaacctagagatgccaa 4622775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 4489911 - 4489857
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagat 194  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||  ||||||||    
T  4489911 ttcaagccattcaagacatttagtatcttctttccaaagattagagtctaaagat 4489857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 4481269 - 4481310
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagatt 181  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  4481269 ttcaagccattcaagacatttagtatcttctttccaaagatt 4481310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 4561080 - 4561121
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagatt 181  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  4561080 ttcaagccattcaagacatttagtatcttctttccaaagatt 4561121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 4470379 - 4470435
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgc 196  Q
    ||||||||| ||||||||||| |||||||| |||||||||||| ||  |||||||||    
T  4470379 ttcaagccactcaagacatttagtatcttctttccaaagattgaaatttaaagatgc 4470435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 4503953 - 4503898
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatg 195  Q
    ||||||||| ||||||||||| |||||||| ||||||||||| ||  |||||||||    
T  4503953 ttcaagccaatcaagacatttagtatcttctttccaaagattagagtctaaagatg 4503898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 4574884 - 4574939
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatg 195  Q
    ||||| ||||||||||||||| |||||||| ||||||||||| ||  |||||||||    
T  4574884 ttcaatccattcaagacatttagtatcttctttccaaagattagagtctaaagatg 4574939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 4626829 - 4626883
Alignment:
Q  255 gaatacaatctactttgttgtctaaatatctcatttgtcagataactctcatctgc 310  Q
    |||||||||||| |||| |||||||||||| ||||||||| |||| ||||||||||    
T  4626829 gaatacaatctagtttggtgtctaaatatc-catttgtcaaataagtctcatctgc 4626883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 4266406 - 4266358
Alignment:
Q  266 actttgttgtctaaatatctcatttgtcagataactctcatctgcatatc 315  Q
    ||||| || |||||||||| ||||||| ||||||||||||||||||||||    
T  4266406 actttattatctaaatatc-catttgttagataactctcatctgcatatc 4266358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 4593112 - 4593172
Alignment:
Q  255 gaatacaatctactttgttgtctaaatatctcatttgtcagataactctcatctgcatatca 316  Q
    |||| |||||||||||  | || ||||||| ||||||| |||||||||||||||||||||||    
T  4593112 gaatccaatctactttagtttccaaatatc-catttgttagataactctcatctgcatatca 4593172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 4829319 - 4829206
Alignment:
Q  28 ctgacatagtatttgtatctgtcaatacaccaacgaaaacttgcg-tctcaaagttggaaaagcggcaaatttgacttattgggaaagtgcggctcagat 126  Q
    |||||||||| |||||||||||  ||||||  || |||||| ||| |||||  | ||||||||  | | ||||||| |||||||| |||||| ||| | |    
T  4829319 ctgacatagtgtttgtatctgttgatacactgacaaaaactcgcggtctcagggctggaaaagtagtagatttgacgtattgggagagtgcgactcgggt 4829220  T
Q  127 gattgccgatgtgt 140  Q
    ||||||||||||||    
T  4829219 gattgccgatgtgt 4829206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 4506753 - 4506796
Alignment:
Q  273 tgtctaaatatctcatttgtcagataactctcatctgcatatcat 317  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||    
T  4506753 tgtccaaatatc-catttgttagataactctcatctgcatatcat 4506796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 4514357 - 4514314
Alignment:
Q  273 tgtctaaatatctcatttgtcagataactctcatctgcatatcat 317  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||||    
T  4514357 tgtccaaatatc-catttgtcaaataactctcatctgcatatcat 4514314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 4517217 - 4517260
Alignment:
Q  273 tgtctaaatatctcatttgtcagataactctcatctgcatatcat 317  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||||    
T  4517217 tgtccaaatatc-catttgtcaaataactctcatctgcatatcat 4517260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 316
Target Start/End: Original strand, 4571882 - 4571910
Alignment:
Q  288 tttgtcagataactctcatctgcatatca 316  Q
    |||||||||||||||||||||||||||||    
T  4571882 tttgtcagataactctcatctgcatatca 4571910  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 3086996 - 3087055
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 199  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||    
T  3086996 ttcaagccattcaagacacttggtatcttctttccaaagattggaacctaaagatgccaa 3087055  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 24103575 - 24103634
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagatgccaa 199  Q
    ||||||||| ||||||||||| |||||||| |||||||||||||||  ||||||||||||    
T  24103575 ttcaagccactcaagacatttagtatcttctttccaaagattggaatttaaagatgccaa 24103634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 24103891 - 24103938
Alignment:
Q  266 actttgttgtctaaatatctcatttgtcagataactctcatctgcatat 314  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  24103891 actttattgtctaaatatc-catttgttagataactctcatctgcatat 24103938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 4240 - 4188
Alignment:
Q  142 caagccattcaagacattttgtatcttccttccaaagattggaacctaaagat 194  Q
    ||||||| |||||||| || |||||||| ||||||||||||||||||||||||    
T  4240 caagccactcaagacacttggtatcttctttccaaagattggaacctaaagat 4188  T

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Target: scaffold0288 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 3271 - 3224
Alignment:
Q  144 agccattcaagacattttgtatcttccttccaaagattggaacctaaa 191  Q
    |||||||||||||| || |||||||| |||||||||||||||||||||    
T  3271 agccattcaagacacttggtatcttctttccaaagattggaacctaaa 3224  T

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Target: scaffold0288; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 2972 - 2918
Alignment:
Q  255 gaatacaatctactttgttgtctaaatatctcatttgtcagataactctcatctgc 310  Q
    |||||||||||||||||||||| ||||||| || |||||| |||||| ||||||||    
T  2972 gaatacaatctactttgttgtccaaatatc-cacttgtcaaataactatcatctgc 2918  T

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Target: scaffold0199 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 39 - 93
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagat 194  Q
    |||||||||||||||||| |  |||||||| |||||||| |||||||||||||||    
T  39 ttcaagccattcaagacactcagtatcttctttccaaaggttggaacctaaagat 93  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 1674802 - 1674856
Alignment:
Q  140 ttcaagccattcaagacattttgtatcttccttccaaagattggaacctaaagat 194  Q
    |||||||||||||||||| |  |||||||| |||||||| |||||||||||||||    
T  1674802 ttcaagccattcaagacactcagtatcttctttccaaaggttggaacctaaagat 1674856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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