View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2241_high_1 (Length: 580)

Name: NF2241_high_1
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2241_high_1
NF2241_high_1
[»] chr6 (14 HSPs)
chr6 (45-377)||(2438800-2439156)
chr6 (45-214)||(3676331-3676505)
chr6 (61-168)||(2537059-2537169)
chr6 (82-168)||(16316657-16316743)
chr6 (96-168)||(10927869-10927941)
chr6 (97-168)||(27901260-27901331)
chr6 (91-165)||(32249936-32250010)
chr6 (519-561)||(2439330-2439372)
chr6 (135-205)||(17590000-17590070)
chr6 (118-168)||(23915527-23915577)
chr6 (45-104)||(3676767-3676831)
chr6 (135-177)||(17589948-17589990)
chr6 (167-212)||(10927743-10927788)
chr6 (173-214)||(35219457-35219498)
[»] chr3 (21 HSPs)
chr3 (109-214)||(22176437-22176542)
chr3 (109-214)||(22101492-22101597)
chr3 (61-168)||(44822221-44822331)
chr3 (45-168)||(22101929-22102057)
chr3 (91-166)||(53359493-53359568)
chr3 (103-168)||(35863689-35863754)
chr3 (61-168)||(28096290-28096400)
chr3 (96-168)||(35369078-35369150)
chr3 (91-168)||(22176876-22176953)
chr3 (91-164)||(22833299-22833372)
chr3 (91-168)||(7115968-7116045)
chr3 (106-164)||(7116577-7116635)
chr3 (97-163)||(34492078-34492144)
chr3 (96-164)||(3422631-3422699)
chr3 (174-214)||(3422811-3422851)
chr3 (175-214)||(22101801-22101840)
chr3 (168-205)||(42897030-42897067)
chr3 (174-214)||(3424693-3424733)
chr3 (174-214)||(35368936-35368976)
chr3 (178-214)||(44822079-44822115)
chr3 (178-214)||(51139766-51139802)
[»] chr5 (12 HSPs)
chr5 (61-214)||(28221965-28222120)
chr5 (61-168)||(28263786-28263896)
chr5 (98-211)||(3160861-3160973)
chr5 (96-168)||(1190401-1190473)
chr5 (98-143)||(3160809-3160854)
chr5 (173-214)||(38938772-38938813)
chr5 (167-214)||(28766093-28766140)
chr5 (167-221)||(7464327-7464381)
chr5 (167-221)||(39850686-39850740)
chr5 (98-143)||(3160756-3160801)
chr5 (174-207)||(38939034-38939067)
chr5 (174-214)||(1190255-1190295)
[»] chr4 (20 HSPs)
chr4 (61-182)||(11974680-11974804)
chr4 (61-168)||(44814511-44814621)
chr4 (61-164)||(3729490-3729596)
chr4 (135-214)||(11974809-11974888)
chr4 (96-168)||(54198299-54198370)
chr4 (93-164)||(38001454-38001525)
chr4 (61-166)||(9162593-9162701)
chr4 (96-167)||(44673273-44673344)
chr4 (61-165)||(5525027-5525132)
chr4 (91-169)||(12216960-12217038)
chr4 (146-205)||(33728869-33728928)
chr4 (167-205)||(2291288-2291326)
chr4 (167-213)||(9162916-9162962)
chr4 (173-214)||(49358018-49358059)
chr4 (174-211)||(54198471-54198508)
chr4 (61-163)||(10726370-10726475)
chr4 (61-163)||(10940139-10940244)
chr4 (167-214)||(44814376-44814423)
chr4 (173-214)||(11064724-11064765)
chr4 (178-214)||(5524881-5524917)
[»] chr7 (15 HSPs)
chr7 (96-214)||(9329647-9329764)
chr7 (96-168)||(11321279-11321351)
chr7 (97-168)||(41755438-41755509)
chr7 (61-168)||(35492178-35492287)
chr7 (91-168)||(47221000-47221077)
chr7 (61-164)||(20621218-20621324)
chr7 (91-168)||(9307724-9307799)
chr7 (98-161)||(9302210-9302273)
chr7 (98-161)||(9306648-9306711)
chr7 (174-211)||(45022631-45022668)
chr7 (91-124)||(9303286-9303319)
chr7 (174-214)||(9302059-9302099)
chr7 (174-214)||(9306497-9306537)
chr7 (174-214)||(11321451-11321491)
chr7 (178-214)||(47220854-47220890)
[»] chr1 (16 HSPs)
chr1 (61-164)||(14494798-14494902)
chr1 (61-168)||(237176-237284)
chr1 (99-168)||(29699187-29699256)
chr1 (96-168)||(50231531-50231603)
chr1 (100-168)||(8528219-8528287)
chr1 (67-168)||(9041223-9041327)
chr1 (91-155)||(20133038-20133102)
chr1 (97-149)||(43575210-43575262)
chr1 (91-161)||(14245889-14245959)
chr1 (167-214)||(24162672-24162719)
chr1 (167-214)||(43577183-43577230)
chr1 (167-214)||(50231398-50231445)
chr1 (102-168)||(49265943-49266009)
chr1 (135-168)||(9046387-9046420)
chr1 (167-211)||(14245797-14245841)
chr1 (178-214)||(14494661-14494697)
[»] chr2 (16 HSPs)
chr2 (56-213)||(44972992-44973148)
chr2 (91-164)||(35193434-35193507)
chr2 (91-168)||(309848-309925)
chr2 (11-164)||(7061867-7062025)
chr2 (91-164)||(43528444-43528517)
chr2 (97-168)||(44539531-44539602)
chr2 (91-168)||(13594515-13594592)
chr2 (167-214)||(19901609-19901656)
chr2 (117-168)||(25047962-25048013)
chr2 (178-214)||(44539702-44539738)
chr2 (167-214)||(7061734-7061781)
chr2 (167-214)||(21956532-21956579)
chr2 (167-221)||(8063236-8063290)
chr2 (107-149)||(27339513-27339555)
chr2 (178-220)||(43528298-43528340)
chr2 (178-214)||(2221938-2221974)
[»] scaffold0066 (2 HSPs)
scaffold0066 (61-166)||(56467-56575)
scaffold0066 (173-214)||(56333-56374)
[»] chr8 (5 HSPs)
chr8 (99-168)||(24432233-24432302)
chr8 (91-164)||(5592692-5592765)
chr8 (167-213)||(32889059-32889105)
chr8 (178-221)||(26528069-26528112)
chr8 (174-214)||(32889177-32889217)
[»] scaffold0025 (1 HSPs)
scaffold0025 (91-168)||(3490-3567)
[»] scaffold0123 (1 HSPs)
scaffold0123 (45-165)||(17180-17305)
[»] scaffold0086 (1 HSPs)
scaffold0086 (167-221)||(48321-48376)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 45 - 377
Target Start/End: Original strand, 2438800 - 2439156
Alignment:
Q  45 gtaacatgaaattttgtt--gtgttagttttttgtgagt-atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattacta 141  Q
    ||||||||||||||||||  |||||||||||||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2438800 gtaacatgaaattttgttttgtgttagttttttgagtttgatctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattacta 2438899  T
Q  142 atccacgtgttattttataattggctatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc-----------gaaaatggtagttttc 230  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||           ||||||| ||||||||    
T  2438900 atccacgtgttattttataattgactatttgtatttaaaattaagggtatttttggaaagaaaagttcaacccaaaagtatgctgaaaatgatagttttc 2438999  T
Q  231 -------------tagatatagatgaatagtgtgtttagtgcattataaatgtacaaacaaacatgaagccttatgaatggtctacatgtcctgaaataa 317  Q
                 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   ||    
T  2439000 tttatatatagtatagatatagatgaatagtgtgtttagtgcattataaatgttcaaacaaacatgaagccttatgaatggtctacatgtcctga---aa 2439096  T
Q  318 ttttgtctaaatggctaaatgtttttctaaattatgttaagaaattgctgagtaattatg 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2439097 ttttgtctaaatggctaaatgtttttctaaattatgttaagaaattgctgagtaattatg 2439156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 45 - 214
Target Start/End: Complemental strand, 3676505 - 3676331
Alignment:
Q  45 gtaacatgaaattttgttgtgt--tagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattac 139  Q
    |||||||||||||||||| |||  |||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  3676505 gtaacatgaaattttgttttgtgatagttttttgtgagtttgatctttggataacagaggtaaaagagggttaacagggacgattagtgatatggattac 3676406  T
Q  140 taatccacgtgttattttataattggctatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| | ||||||||| ||||||    
T  3676405 taatccacgtgttattgtataattgactatttgtatttaaaattaagggtatttttgggaagaaaagtccaaccc 3676331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 2537169 - 2537059
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   |||| ||| |||| ||||||||| |||||||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  2537169 ttgtgctagttttttgtgagtttgatctgtggttaacggaggtaaaatagggttaacggggacgattagtgacatggattagtaacccacgtgttatttt 2537070  T
Q  158 ataattggcta 168  Q
    |||||||||||    
T  2537069 ataattggcta 2537059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 16316657 - 16316743
Alignment:
Q  82 atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||| ||| ||||| |||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  16316657 atctatggttaacataggtaaaagagggttaacggagacgattagtgacatggattagtaatccacgtgttattttataattagcta 16316743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 10927941 - 10927869
Alignment:
Q  96 gaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||||    
T  10927941 gaggtaaaagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattggcta 10927869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 27901260 - 27901331
Alignment:
Q  97 aggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    ||||||||||||||||||||||||||| ||| ||||| |||| ||||||| |||||||||||||||||||||    
T  27901260 aggtaaaagagggttaacggggacgatcagtaacatggattagtaatccatgtgttattttataattggcta 27901331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 32249936 - 32250010
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattgg 165  Q
    |||||||||||||||| ||||||| | |||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  32249936 taacagaggtaaaagatggttaacagagacgattagtgacatggattagtaatctacgtgttattttataattgg 32250010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 519 - 561
Target Start/End: Original strand, 2439330 - 2439372
Alignment:
Q  519 gtaacttttgtttttcaaattaataatacaggtaagatctgtg 561  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2439330 gtaacttttgtttttcaaattaataatacaggtaagatctgtg 2439372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 17590000 - 17590070
Alignment:
Q  135 attactaatccacgtgttattttataattggctatttatatttaaaattaagggtattttttgaaagaaaa 205  Q
    ||||||||||||||||||||||| ||||  | ||||| || |||||||||| ||||||||| |||||||||    
T  17590000 attactaatccacgtgttattttgtaatgagttatttgtaattaaaattaatggtatttttggaaagaaaa 17590070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 23915527 - 23915577
Alignment:
Q  118 gacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  23915527 gacgattagtgacatagattagtaatccacgtgttattttataattggcta 23915577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 3676831 - 3676767
Alignment:
Q  45 gtaacatgaaattttgttgtgt--tagttttttgtgagt---atctttggataacagaggtaaaa 104  Q
    |||||||||||||||||| |||  |||||||||||||||   |||||||||||||||||||||||    
T  3676831 gtaacatgaaattttgttttgtgatagttttttgtgagtttgatctttggataacagaggtaaaa 3676767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 17589948 - 17589990
Alignment:
Q  135 attactaatccacgtgttattttataattggctatttatattt 177  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  17589948 attactaatccacgtgttaatttataattggctatttgtattt 17589990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 10927788 - 10927743
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaac 212  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||||    
T  10927788 tatttatatttaaaattaagagtatttttggaaagaaaatttcaac 10927743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 35219457 - 35219498
Alignment:
Q  173 tatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  35219457 tatttaaaattaagggtatttttggaaagaaaagtccaaccc 35219498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 8e-41; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 22176542 - 22176437
Alignment:
Q  109 gttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggctatttatatttaaaattaagggtattttttgaaagaaaagtt 208  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  22176542 gttaacgtggacgattagtgacatggattactaatccacgtgttattttataattggctatttgtatttaaaattaagggtatttttgaaaagaaaagtt 22176443  T
Q  209 caaccc 214  Q
    ||||||    
T  22176442 caaccc 22176437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 22101597 - 22101492
Alignment:
Q  109 gttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggctatttatatttaaaattaagggtattttttgaaagaaaagtt 208  Q
    |||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  |||||||||||    
T  22101597 gttaacgttgacgattagtgacatggattactaatccacgtgttattttataattggctatttgtatttaaaattaaaggtatttttgaaaagaaaagtt 22101498  T
Q  209 caaccc 214  Q
    ||||||    
T  22101497 caaccc 22101492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 44822331 - 44822221
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| ||||||||||| |||   |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  44822331 ttgtgctagttttttgtaagtttgatctttggttaacagatgtaaaagagggttaacggggacgattagtgacatgaattagtaatccatgtgttgtttt 44822232  T
Q  158 ataattggcta 168  Q
    |||||||||||    
T  44822231 ataattggcta 44822221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 22102057 - 22101929
Alignment:
Q  45 gtaacatgaaattttgtt--gtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattac 139  Q
    |||||||||  |||||||  ||| |||||||||||||||   || | ||| |||| |||||||||||||||||| ||||||||||||||||||| ||||     
T  22102057 gtaacatgactttttgtttagtgctagttttttgtgagtttgatttgtggttaacggaggtaaaagagggttaatggggacgattagtgacatggattag 22101958  T
Q  140 taatccacgtgttattttataattggcta 168  Q
    ||||||| ||||||||||||||| |||||    
T  22101957 taatccatgtgttattttataataggcta 22101929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 53359568 - 53359493
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggc 166  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||| |||| |||||| |||||||||||||||    
T  53359568 taacggaggtaaaagagggttaacggggatgattagtgacatgaattaataattcacgtgctattttataattggc 53359493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 35863689 - 35863754
Alignment:
Q  103 aagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  35863689 aagatggttaacggggacgattagtgacatggattagtaatccacgtgttattttataattggcta 35863754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 28096400 - 28096290
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   |||| ||  |||| |||| ||||||||||||||| ||||||||||||||||| |||| ||||| || |||||||||    
T  28096400 ttgtgctagttttttgtgagtttgatctgtgattaacggagggaaaagagggttaacgaggacgattagtgacatggattagtaatcaacatgttatttt 28096301  T
Q  158 ataattggcta 168  Q
    |||||||||||    
T  28096300 ataattggcta 28096290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 35369150 - 35369078
Alignment:
Q  96 gaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    ||||||||||| |||||| ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  35369150 gaggtaaaagatggttaatggggacgattagtgacatggattagtaatccatgtgttattttataattggcta 35369078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 22176953 - 22176876
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||| ||||||||| |||||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||    
T  22176953 taacggaggtaaaaaagggttaatggggacgattagtgacatggattagtaatccatgtgttattttataataggcta 22176876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 22833372 - 22833299
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattg 164  Q
    ||||||||||||||| |||| |||| | ||||||||||||||| |||| |||||||||||||||||||||||||    
T  22833372 taacagaggtaaaagtgggtcaacgagaacgattagtgacatggattagtaatccacgtgttattttataattg 22833299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 7115968 - 7116045
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||| ||||||||||||| ||||||||||| |||||| ||||| | || |||| ||||||||||||||||||| ||||    
T  7115968 taacggaggtaaaagaggattaacggggacaattagtaacatggactagtaatacacgtgttattttataatttgcta 7116045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 7116577 - 7116635
Alignment:
Q  106 agggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattg 164  Q
    ||||||||| ||||| ||||||||||||||| | |||| ||||||||||||||||||||    
T  7116577 agggttaaccgggacaattagtgacatgaatcattaattcacgtgttattttataattg 7116635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 34492144 - 34492078
Alignment:
Q  97 aggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataatt 163  Q
    ||||||||||| ||||||||  || |||||||||||| |||| |||| |||||||||||||||||||    
T  34492144 aggtaaaagagagttaacggaaactattagtgacatggattagtaattcacgtgttattttataatt 34492078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 3422631 - 3422699
Alignment:
Q  96 gaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattg 164  Q
    |||||||||||||| ||||||| |||||||  |||||| |||| |||||||| ||||| ||||||||||    
T  3422631 gaggtaaaagagggataacgggtacgattaaagacatggattaataatccacatgttactttataattg 3422699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 3422811 - 3422851
Alignment:
Q  174 atttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  3422811 atttaaaattaagggtatttttggaaagaaaagtccaaccc 3422851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 22101840 - 22101801
Alignment:
Q  175 tttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  22101840 tttaaaattaagggtatttttgaaaagaaaagttcaaccc 22101801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 42897030 - 42897067
Alignment:
Q  168 atttatatttaaaattaagggtattttttgaaagaaaa 205  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  42897030 atttgtatttaaaattaagggtatttttggaaagaaaa 42897067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 3424693 - 3424733
Alignment:
Q  174 atttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||||||||||||||||||| |||| |||||| ||||||    
T  3424693 atttaaaattaagggtatttttggaaataaaagtccaaccc 3424733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 35368976 - 35368936
Alignment:
Q  174 atttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||||||| |||||||||||| ||||||||||| ||||||    
T  35368976 atttaaaatcaagggtatttttggaaagaaaagtccaaccc 35368936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 44822115 - 44822079
Alignment:
Q  178 aaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||||||||||||||| |||||||| |||||||||    
T  44822115 aaaattaagggtatttttggaaagaaatgttcaaccc 44822079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 51139766 - 51139802
Alignment:
Q  178 aaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||||||||||||||||  |||||||||||||||||    
T  51139766 aaaattaagggtatttttgaaaagaaaagttcaaccc 51139802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 28222120 - 28221965
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   |||||||| ||||  |||||||||||||||||| |  ||  ||||||||||| ||||||||||||| |||||||||    
T  28222120 ttgtgctagttttttgtgagtttgatctttggttaacgaaggtaaaagagggttaacagt-acagttagtgacatggattactaatccacatgttatttt 28222022  T
Q  158 ataattggctatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  28222021 ataattgactatttgtatttaaaattaagggtatttttggaaagaaaagtccaaccc 28221965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 28263786 - 28263896
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   || | ||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28263786 ttgtgctagttttttgtgagtttgatatgtggttaacagaggtaaaagagagttaacggggacgattagtgacatgaattagtaatccacgtgttatttt 28263885  T
Q  158 ataattggcta 168  Q
    |||||||||||    
T  28263886 ataattggcta 28263896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 3160861 - 3160973
Alignment:
Q  98 ggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggctatttatatttaaaattaagggtattttttg 197  Q
    ||||||||||||||||||| |  ||||||||| ||| ||||||||| ||| ||||||||||||||||  || || |||| ||||||||||||| |||| |    
T  3160861 ggtaaaagagggttaacggagctgattagtgatatggattactaattcacatgttattttataattgattaattgtattcaaaattaagggta-ttttgg 3160959  T
Q  198 aaagaaaagttcaa 211  Q
    ||||||||||||||    
T  3160960 aaagaaaagttcaa 3160973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 1190473 - 1190401
Alignment:
Q  96 gaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||||||||||||||||||||||||||||  ||||||| |||| |||| || |||||||||||||||||||||    
T  1190473 gaggtaaaagagggttaacggggacgattgttgacatggattagtaattcatgtgttattttataattggcta 1190401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 3160809 - 3160854
Alignment:
Q  98 ggtaaaagagggttaacggggacgattagtgacatgaattactaat 143  Q
    ||||||||||||||||||| || |||||||||||||||||| ||||    
T  3160809 ggtaaaagagggttaacggagatgattagtgacatgaattattaat 3160854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 38938772 - 38938813
Alignment:
Q  173 tatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  38938772 tatttaaaattaagggtatttttggaaagaaaagtccaaccc 38938813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 28766140 - 28766093
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||| |||| |||||||||||||||||| ||||||||| ||||||||    
T  28766140 tatttgtattaaaaattaagggtatttttggaaagaaaaattcaaccc 28766093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 7464327 - 7464381
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaacccgaaaatg 221  Q
    ||||| |||| |||||| | ||||||||| |||||||||||||||||| ||||||    
T  7464327 tatttgtattgaaaattgaaggtatttttggaaagaaaagttcaacccaaaaatg 7464381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 39850740 - 39850686
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaacccgaaaatg 221  Q
    ||||| |||| |||||| || |||||||||||||||||||| |||||| ||||||    
T  39850740 tatttctattgaaaattgagagtattttttgaaagaaaagtccaacccaaaaatg 39850686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 3160756 - 3160801
Alignment:
Q  98 ggtaaaagagggttaacggggacgattagtgacatgaattactaat 143  Q
    ||||||||||||||||| | || ||||||||||||| |||||||||    
T  3160756 ggtaaaagagggttaacagagatgattagtgacatggattactaat 3160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 38939034 - 38939067
Alignment:
Q  174 atttaaaattaagggtattttttgaaagaaaagt 207  Q
    |||||||||||||||||||||| |||||||||||    
T  38939034 atttaaaattaagggtatttttggaaagaaaagt 38939067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 1190295 - 1190255
Alignment:
Q  174 atttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||||||||||||||||||| ||||||||| | ||||||    
T  1190295 atttaaaattaagggtatttttggaaagaaaattccaaccc 1190255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 11974680 - 11974804
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   |||||||| |||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  11974680 ttgtgctagttttttgtgagtttgatctttggttaacggaggtaaaagagagttaacggagacgattagtggcatgaattactaatccatgtgttatttt 11974779  T
Q  158 ataattggctatttatatttaaaat 182  Q
    |||||||||||||| ||||||||||    
T  11974780 ataattggctatttgtatttaaaat 11974804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 44814621 - 44814511
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   |||| ||| |||| ||||||||||||||||||||||||| |||||||||||  |||| ||||| ||||||||||||    
T  44814621 ttgtgctagttttttgtgagtttgatctatggttaacggaggtaaaagagggttaacggggacaattagtgacatagattagtaatctacgtgttatttt 44814522  T
Q  158 ataattggcta 168  Q
    |||||||||||    
T  44814521 ataattggcta 44814511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 3729596 - 3729490
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   |||| ||| |||| |||||||||||||||||||  ||||||||||||||||| |||| |||||||| |||||||||    
T  3729596 ttgtgctagttttttgtgagtttgatctatggttaacggaggtaaaagagggttaacatggacgattagtgacatgtattagtaatccacatgttatttt 3729497  T
Q  158 ataattg 164  Q
    |||||||    
T  3729496 ataattg 3729490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 11974809 - 11974888
Alignment:
Q  135 attactaatccacgtgttattttataattggctatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||||    
T  11974809 attactaatccacgtgttattttgtaattggctatttgtaattaaaattaagggtattttggaaaagaaaagttcaaccc 11974888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 54198299 - 54198370
Alignment:
Q  96 gaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  54198299 gaggtaaaagagggttaacggg-atgattagtgacatggattagtaatccacgtgttattttataattggcta 54198370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 38001525 - 38001454
Alignment:
Q  93 acagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattg 164  Q
    |||||||||||| |||||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||    
T  38001525 acagaggtaaaatagggttaacggggatgattagtgacatggattagtaatccatgtgttattttataattg 38001454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 61 - 166
Target Start/End: Original strand, 9162593 - 9162701
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   || | ||| |||| || ||||||||||||||||| ||| ||||| ||||||| |||| ||||||||||||||||||    
T  9162593 ttgtgctagttttttgtgagtttgatttgtggttaacggatgtaaaagagggttaacgtggaagattaatgacatggattattaatccacgtgttatttt 9162692  T
Q  158 ataattggc 166  Q
    |||||||||    
T  9162693 ataattggc 9162701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 44673273 - 44673344
Alignment:
Q  96 gaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggct 167  Q
    |||||||||||||||||||||| || ||||||||| ||||||| |||| |||||||||| ||||||||||||    
T  44673273 gaggtaaaagagggttaacgggaacaattagtgacgtgaattagtaattcacgtgttatcttataattggct 44673344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 5525132 - 5525027
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   || | ||| |||| |||||||||||| ||||||||||||||  ||||||||| |||| ||||| || |||||||||    
T  5525132 ttgtgctagttttttgtgagtttgatttgtggttaacggaggtaaaagagagttaacggggacga--agtgacatggattagtaatctacttgttatttt 5525035  T
Q  158 ataattgg 165  Q
    ||||||||    
T  5525034 ataattgg 5525027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 12217038 - 12216960
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggctat 169  Q
    ||||| ||||||||||||||||||  | || |||| ||||||| |||| |||||||| |||||||||||||||||||||    
T  12217038 taacataggtaaaagagggttaacaagaacaattactgacatggattagtaatccacatgttattttataattggctat 12216960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 33728928 - 33728869
Alignment:
Q  146 acgtgttattttataattggctatttatatttaaaattaagggtattttttgaaagaaaa 205  Q
    ||||||||||||||||||| |||||| ||||||||||||||| |||||||  ||||||||    
T  33728928 acgtgttattttataattgactatttgtatttaaaattaaggatatttttgaaaagaaaa 33728869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 2291288 - 2291326
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaa 205  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  2291288 tatttatattgaaaattaagggtattttttgaaagaaaa 2291326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 9162916 - 9162962
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaacc 213  Q
    ||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  9162916 tatttgtatttaaaattaagggtatttttggaaagaaaagtccaacc 9162962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 49358059 - 49358018
Alignment:
Q  173 tatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  49358059 tatttaaaattaagggtatttttggaaagaaaagtccaaccc 49358018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 54198471 - 54198508
Alignment:
Q  174 atttaaaattaagggtattttttgaaagaaaagttcaa 211  Q
    |||||||||||||||||||||| |||||||||||||||    
T  54198471 atttaaaattaagggtatttttggaaagaaaagttcaa 54198508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 10726475 - 10726370
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   || | ||| ||||| | | ||||||||||||| ||||||||||  ||||||  |||| |||||||| ||||||| |    
T  10726475 ttgtgctagttttttgtgagtttgatatgtggttaacaaaagcaaaagagggttaatggggacgatttatgacatagattagtaatccacatgttattct 10726376  T
Q  158 ataatt 163  Q
    ||||||    
T  10726375 ataatt 10726370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 10940244 - 10940139
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   || | ||| ||||| | | ||||||||||||| ||||||||||  ||||||  |||| |||||||| ||||||| |    
T  10940244 ttgtgctagttttttgtgagtttgatatgtggttaacaaaagcaaaagagggttaatggggacgatttatgacatagattagtaatccacatgttattct 10940145  T
Q  158 ataatt 163  Q
    ||||||    
T  10940144 ataatt 10940139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 44814423 - 44814376
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||| | |||||||||||||||||||| ||||||||||||| ||||    
T  44814423 tatttaaaattaaaattaagggtatttttggaaagaaaagttctaccc 44814376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 11064724 - 11064765
Alignment:
Q  173 tatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||| |||||||||||||||||| ||||||||||| ||||||    
T  11064724 tattgaaaattaagggtatttttggaaagaaaagtccaaccc 11064765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 5524917 - 5524881
Alignment:
Q  178 aaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  5524917 aaaattaagggtatttttggaaagaaaagtacaaccc 5524881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 9329764 - 9329647
Alignment:
Q  96 gaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggctatttatatttaaaattaagggtattttt 195  Q
    |||||||||||||  |||| | || ||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||    
T  9329764 gaggtaaaagaggtctaacagagatgattaatgacatggattactaatccacatgttattttataattgtctatttatatttaaaattaagggtat-ttt 9329666  T
Q  196 tgaaagaaaagttcaaccc 214  Q
    |||||||||| | ||||||    
T  9329665 tgaaagaaaaatccaaccc 9329647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 11321279 - 11321351
Alignment:
Q  96 gaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  11321279 gaggtaaaagagggttaatggggacgattagtgacatgaattagtaattcatgtgttattttataattggcta 11321351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 41755438 - 41755509
Alignment:
Q  97 aggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||    
T  41755438 aggtaaaagagggttaacggggacgattggtgacatgaattagtaatccacatgttattttacaattggcta 41755509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 35492287 - 35492178
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| ||||||||||||||    |||| ||| |||| ||||||||| |||||||||| ||| |||||||||||||||||| |||||||| |||||||||    
T  35492287 ttgtgctagttttttgtgagcttgatctatggttaacggaggtaaaa-agggttaacgaggatgattagtgacatgaattagtaatccacatgttatttt 35492189  T
Q  158 ataattggcta 168  Q
    |||||||||||    
T  35492188 ataattggcta 35492178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 47221077 - 47221000
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||| ||||||||||||||||| | ||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  47221077 taacggaggtaaaagagggttagctgggacaattagtgacatgaattagtaattcacgtgttattttataactggcta 47221000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 20621218 - 20621324
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   || | ||| |||| |||||||||||  ||||||||||||||||||||||||| |||| ||||| || |||||||||    
T  20621218 ttgtgctagttttttgtgagtttgatttgtggttaacggaggtaaaagaaagttaacggggacgattagtgacatggattagtaatctacttgttatttt 20621317  T
Q  158 ataattg 164  Q
    |||||||    
T  20621318 ataattg 20621324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 9307724 - 9307799
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||| ||||||||||||||||||||||||||| |||||||||| |||| |||| |||||| ||||||| |||||||||    
T  9307724 taacggaggtaaaagagggttaacggggacga-tagtgacatggattagtaatgcacgtgctatttta-aattggcta 9307799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 9302273 - 9302210
Alignment:
Q  98 ggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataa 161  Q
    |||||||||||||||||   |||||||||| ||||| |||| ||||||||| ||||||||||||    
T  9302273 ggtaaaagagggttaacaatgacgattagttacatggattattaatccacgagttattttataa 9302210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 9306711 - 9306648
Alignment:
Q  98 ggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataa 161  Q
    |||||||||||||||||   |||||||||| ||||| |||| ||||||||| ||||||||||||    
T  9306711 ggtaaaagagggttaacaatgacgattagttacatggattattaatccacgagttattttataa 9306648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 45022631 - 45022668
Alignment:
Q  174 atttaaaattaagggtattttttgaaagaaaagttcaa 211  Q
    |||||||||||| |||||||||||||||||||||||||    
T  45022631 atttaaaattaaaggtattttttgaaagaaaagttcaa 45022668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 9303286 - 9303319
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgatt 124  Q
    |||| |||||||||||||||||||||||||||||    
T  9303286 taacggaggtaaaagagggttaacggggacgatt 9303319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 9302099 - 9302059
Alignment:
Q  174 atttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||||||||||||||||||||  |||||||||| ||||||    
T  9302099 atttaaaattaagggtatttttgaaaagaaaagtccaaccc 9302059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 9306537 - 9306497
Alignment:
Q  174 atttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||||||||||||||||||||  |||||||||| ||||||    
T  9306537 atttaaaattaagggtatttttgaaaagaaaagtccaaccc 9306497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 11321451 - 11321491
Alignment:
Q  174 atttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||||||||||||||| |||| ||||||||||| ||||||    
T  11321451 atttaaaattaagggtagttttggaaagaaaagtccaaccc 11321491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 47220890 - 47220854
Alignment:
Q  178 aaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||||||||||||||| |||||||||||| |||||    
T  47220890 aaaattaagggtatttttggaaagaaaagtttaaccc 47220854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 14494902 - 14494798
Alignment:
Q  61 ttgtgttagttttttgtgagtatctt-tggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttat 159  Q
    ||||| ||||||||||||||| |  | ||| |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  14494902 ttgtgctagttttttgtgagtttgatgtggttaacagaggtaaaagagggttaacggagacgattagtgacatggattagtaatccacgtgttattttat 14494803  T
Q  160 aattg 164  Q
    |||||    
T  14494802 aattg 14494798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 237284 - 237176
Alignment:
Q  61 ttgtgttagttttttgtgagt--atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttta 158  Q
    ||||| ||||||||||||| |  |||| ||| |||| |||||||||||||||||| || |||||||||||||||| |||| |||| ||||||||||||||    
T  237284 ttgtgctagttttttgtgatttgatctatggttaacggaggtaaaagagggttaaaggagacgattagtgacatggattagtaat-cacgtgttatttta 237186  T
Q  159 taattggcta 168  Q
    ||||||||||    
T  237185 taattggcta 237176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 29699187 - 29699256
Alignment:
Q  99 gtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||    
T  29699187 gtaaaagatggttaacggggacgatcagtgacatggattagtaatccacgtgttattttataattggcta 29699256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 50231603 - 50231531
Alignment:
Q  96 gaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||| ||||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||||||||||||    
T  50231603 gaggaaaaagagggttaacgggaacgattattgacatggattagtaatccacgtgttattttataattggcta 50231531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 8528287 - 8528219
Alignment:
Q  100 taaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    ||||||||||||||| |||||||| | ||||||| |||| |||||||||||||||||||||||||||||    
T  8528287 taaaagagggttaacagggacgatcattgacatggattagtaatccacgtgttattttataattggcta 8528219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 9041327 - 9041223
Alignment:
Q  67 tagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataatt 163  Q
    |||||||||||||||   |||| ||  |||| |||||||||||||||||||||  ||||||| ||||||| ||||  ||| ||||| |||||||||||||    
T  9041327 tagttttttgtgagtttgatctatgattaacggaggtaaaagagggttaacggaaacgattaatgacatggattagcaattcacgtattattttataatt 9041228  T
Q  164 ggcta 168  Q
    |||||    
T  9041227 ggcta 9041223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 20133038 - 20133102
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatt 155  Q
    |||| |||||||||||||||||||| |||||||| |||||||| |||| ||||| ||||||||||    
T  20133038 taacggaggtaaaagagggttaacgaggacgattggtgacatggattagtaatctacgtgttatt 20133102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 43575210 - 43575262
Alignment:
Q  97 aggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgt 149  Q
    ||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||    
T  43575210 aggtaaaagagggttaatggggacgattactgacatggattagtaatccacgt 43575262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 14245959 - 14245889
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataa 161  Q
    ||||||| |||||||| ||||||| |||||||||||||||||  || | ||||| | ||||||||||||||    
T  14245959 taacagatgtaaaagaaggttaactgggacgattagtgacatcgataagtaatctatgtgttattttataa 14245889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 24162672 - 24162719
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||| |||||||||||||||||||| || ||||||||||| ||||||    
T  24162672 tatttgtatttaaaattaagggtattcttggaaagaaaagtccaaccc 24162719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 43577183 - 43577230
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||| |||| |||||| ||||||||||||||||||||||| ||||||    
T  43577183 tatttgtattgaaaattgagggtattttttgaaagaaaagtccaaccc 43577230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 50231445 - 50231398
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||| |||||||||||||||||||||||  |||||||| ||||||||    
T  50231445 tatttgtatttaaaattaagggtatttttgaaaagaaaatttcaaccc 50231398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 49266009 - 49265943
Alignment:
Q  102 aaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||||||||||||||| || ||||||||||   |||| |||| |||| |||||||||||||| ||||    
T  49266009 aaagagggttaacgggaacaattagtgacactgattagtaattcacgcgttattttataattagcta 49265943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 9046387 - 9046420
Alignment:
Q  135 attactaatccacgtgttattttataattggcta 168  Q
    |||| |||||||||||||||||||||||||||||    
T  9046387 attagtaatccacgtgttattttataattggcta 9046420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 14245841 - 14245797
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaa 211  Q
    ||||| |||||||||| |||||||||||| |||| ||||||||||    
T  14245841 tatttgtatttaaaatcaagggtatttttagaaataaaagttcaa 14245797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 14494697 - 14494661
Alignment:
Q  178 aaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  14494697 aaaattaagggtatttttggaaagaaaagtccaaccc 14494661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 56 - 213
Target Start/End: Original strand, 44972992 - 44973148
Alignment:
Q  56 ttttgttgtgt--tagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtg 150  Q
    |||||||||||  ||||||||||||| |   |||||||| |||  ||||||||| ||||||||||||||  |||||||| ||| |||||||||      |    
T  44972992 ttttgttgtgtgctagttttttgtgaatttgatctttggttaatggaggtaaaaaagggttaacggggaaaattagtgagatggattactaat------g 44973085  T
Q  151 ttattttataattggctatttatatttaaaattaagggtattttttgaaagaaaagttcaacc 213  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  44973086 ttattttataattgactatttgtatttaaaattaagggtatttttagaaagaaaagtccaacc 44973148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 35193434 - 35193507
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattg 164  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||    
T  35193434 taacggaggtaaaagagggttaacggggacgattagtgacatggattagtaatccacatgttattttataattg 35193507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 309925 - 309848
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||| ||||||||||| | |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||    
T  309925 taacggaggtaaaagaagtttaacggggacgattagtgacatggattagtaatccacatgttattttataattggcta 309848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 7062025 - 7061867
Alignment:
Q  11 cacagatgtacaacataaaagcggttgnnnnnnng-taacatgaaattttgttgtgt--tagttttttgtgagt---atctttggataacagaggtaaaa 104  Q
    |||||||||||||||||||| ||||||       | ||||||||  ||||||| |||  |||||||||||||||   || | |||||||| |||||||||    
T  7062025 cacagatgtacaacataaaatcggttgataaaaaggtaacatgagtttttgttttgtgctagttttttgtgagtttgatatgtggataacggaggtaaaa 7061926  T
Q  105 gagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattg 164  Q
    |||| |||||| ||||||||||||| |||||||| ||||||| |||||||||||||||||    
T  7061925 gagg-ttaacgaggacgattagtgatatgaattagtaatccatgtgttattttataattg 7061867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 43528517 - 43528444
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattg 164  Q
    |||| ||||||||||||||||||||| |||||||||||||||| |||| |||| ||| ||||||||||||||||    
T  43528517 taacggaggtaaaagagggttaacggagacgattagtgacatggattagtaattcacatgttattttataattg 43528444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 44539531 - 44539602
Alignment:
Q  97 aggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||||||||| ||||||| | ||| |||| |||||||||||| |||||||||||||||||||||||||||||    
T  44539531 aggtaaaagaaggttaactgtgacaattaatgacatgaattagtaatccacgtgttattttataattggcta 44539602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 13594592 - 13594515
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||| |||||||||||||||||| || |||||||||| ||||| |||| |||||||| ||||||||||||||| ||||    
T  13594592 taacggaggtaaaagagggttaatggagacgattagttacatggattagtaatccacatgttattttataattagcta 13594515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 19901609 - 19901656
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  19901609 tatttttatttaaaattaagggtatttttggaaagaaaagtccaaccc 19901656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 25047962 - 25048013
Alignment:
Q  117 ggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    ||||||||||||||||  |||| ||||||| |||||||||||||||||||||    
T  25047962 ggacgattagtgacatacattagtaatccatgtgttattttataattggcta 25048013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 44539702 - 44539738
Alignment:
Q  178 aaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||||||||||||||| ||||||||||||||||||    
T  44539702 aaaattaagggtatttttggaaagaaaagttcaaccc 44539738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 7061781 - 7061734
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||| |||||||||| ||||||||||||  |||||||||||||||||    
T  7061781 tatttgtatttaaaatcaagggtatttttgaaaagaaaagttcaaccc 7061734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 21956579 - 21956532
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||| |||||||||||||||||||||||  |||||||||| ||||||    
T  21956579 tatttgtatttaaaattaagggtatttttgaaaagaaaagtccaaccc 21956532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 8063236 - 8063290
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaacccgaaaatg 221  Q
    ||||| |||| |||||| ||||||||||||||||||||| ||||| || ||||||    
T  8063236 tatttgtattgaaaattgagggtattttttgaaagaaaaattcaatccaaaaatg 8063290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 27339555 - 27339513
Alignment:
Q  107 gggttaacggggacgattagtgacatgaattactaatccacgt 149  Q
    |||||||| | ||||||||||||||||||||| ||||||||||    
T  27339555 gggttaacagagacgattagtgacatgaattagtaatccacgt 27339513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 43528340 - 43528298
Alignment:
Q  178 aaaattaagggtattttttgaaagaaaagttcaacccgaaaat 220  Q
    |||||||||||||||||| ||||||||||| |||||| |||||    
T  43528340 aaaattaagggtatttttggaaagaaaagtccaacccaaaaat 43528298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 2221974 - 2221938
Alignment:
Q  178 aaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  2221974 aaaaataagggtatttttggaaagaaaagttcaaccc 2221938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 56575 - 56467
Alignment:
Q  61 ttgtgttagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttatttt 157  Q
    ||||| |||||||||||||||   || | ||| ||||| |||||||||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||    
T  56575 ttgtgctagttttttgtgagtttgatatgtggttaacaaaggtaaaagagggttaacggagacgtttagtgacatggattaataatccacgtgttatttt 56476  T
Q  158 ataattggc 166  Q
    |||||||||    
T  56475 ataattggc 56467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 56374 - 56333
Alignment:
Q  173 tatttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    |||||| |||||||||||||||| ||||||||||| ||||||    
T  56374 tatttataattaagggtatttttggaaagaaaagtccaaccc 56333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 24432302 - 24432233
Alignment:
Q  99 gtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  24432302 gtaaaagagggttaacggggacgattagtgacatgaattagtattccacatgttattttataattggcta 24432233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 5592692 - 5592765
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattg 164  Q
    ||||||||||||||| |||| |||| | ||||||||||||||| |||| |||||||||||||||||||||||||    
T  5592692 taacagaggtaaaagtgggtcaacgagaacgattagtgacatggattagtaatccacgtgttattttataattg 5592765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 32889105 - 32889059
Alignment:
Q  167 tatttatatttaaaattaagggtattttttgaaagaaaagttcaacc 213  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  32889105 tatttgtatttaaaattaagggtatttttggaaagaaaagttcaacc 32889059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 26528112 - 26528069
Alignment:
Q  178 aaaattaagggtattttttgaaagaaaagttcaacccgaaaatg 221  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  26528112 aaaattaagggtatttttggaaagaaaagttcaacccaaaaatg 26528069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 32889217 - 32889177
Alignment:
Q  174 atttaaaattaagggtattttttgaaagaaaagttcaaccc 214  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  32889217 atttaaaattaagggtatttttgaaaagaaaagttcaaccc 32889177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 3490 - 3567
Alignment:
Q  91 taacagaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattggcta 168  Q
    |||| |||||||||||||||||||  ||||||||||||| ||| |||| |||||||||||||||||||||||| ||||    
T  3490 taacggaggtaaaagagggttaacatggacgattagtgatatggattagtaatccacgtgttattttataattagcta 3567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 17180 - 17305
Alignment:
Q  45 gtaacatgaaattttgttgtgt--tagttttttgtgagt---atctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattac 139  Q
    |||||||||| ||||||| |||  |||||||||||| ||   |||| ||| |||| ||  ||||||||||||||||| ||| |||||||||||| ||||     
T  17180 gtaacatgaatttttgttttgtgatagttttttgtgtgtttgatctatggttaacggaactaaaagagggttaacggagacaattagtgacatggattag 17279  T
Q  140 taatccacgtgttattttataattgg 165  Q
    ||||||| || |||||||||||||||    
T  17280 taatccatgtattattttataattgg 17305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 48376 - 48321
Alignment:
Q  167 tatttatatttaaaattaagggtatt-ttttgaaagaaaagttcaacccgaaaatg 221  Q
    ||||| |||||||||||||||||||| |||| |||||||||| |||||| ||||||    
T  48376 tatttgtatttaaaattaagggtatttttttaaaagaaaagtccaacccaaaaatg 48321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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