View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2241_high_11 (Length: 250)
Name: NF2241_high_11
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2241_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 33632796 - 33633035
Alignment:
| Q |
1 |
caatcataaaaaatcaacaagcaaatactatggttttataagtgaagaaattgcaacccctggttctatagtttttagttgtgatttattactatgataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33632796 |
caatcataaaaaatcaacaagcaaatactatggttttataagtgaagaaattgcaaccccttgttctatagtttttagttgtgatttattactatgataa |
33632895 |
T |
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| Q |
101 |
gcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaacttttgaatctgccaaaaagaaaaagtagcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33632896 |
gcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaacttttgaatctgcaaaaaagaaaaagtagcat |
33632995 |
T |
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| Q |
201 |
cgcaattatcatactatgtctgaacaaggtagtgtctgtg |
240 |
Q |
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| T |
33632996 |
cacaattatcatactatgtctgaacaaggtagtgtctgtg |
33633035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29193154 - 29192921
Alignment:
| Q |
1 |
caatcataaaaaatcaacaagcaaatactatggttttataagtgaagaaattgcaacccctggttctatagtttttagttgtgatttatt--actatgat |
98 |
Q |
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| T |
29193154 |
caatcagaaaaaatcaacaagcaaagactatggttttataagtgca---agtgcaaccgctggttctat----tttagttgtgatttattttagtatgtt |
29193062 |
T |
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| Q |
99 |
aagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaacttttgaatctgccaaaaagaaaaagtagc |
198 |
Q |
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| T |
29193061 |
aagcatcttttaccttcaaagcactgatgaatgattgtgtttcatagattgatggaaacctcatagcaaacttttgaatctgccaaaaag-aaaagtagc |
29192963 |
T |
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| Q |
199 |
atcgcaattatcatactatgtctgaacaaggtagtgtctgtg |
240 |
Q |
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| T |
29192962 |
atcacaattatcataatatgtctgaataaggcagtgtctgtg |
29192921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 29183063 - 29182893
Alignment:
| Q |
8 |
aaaaaatcaacaagcaaatactatggttttataagtgaa---------gaaattgcaacccctggttctatagtttttagttgtgatttatt--actatg |
96 |
Q |
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|||||||||||||||||| |||||||||||||||||| | | || ||||||| |||||||||| ||||||||||||||||| | |||| |
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| T |
29183063 |
aaaaaatcaacaagcaaagactatggttttataagtgcaagtgcaagtgcaagtgcaaccgctggttctat----tttagttgtgatttattttagtatg |
29182968 |
T |
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| Q |
97 |
ataagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaactt |
171 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29182967 |
ttaagcatcttttaccttcaaagcactgatgaatgattgtgtttcatagattgatggaaacctcatagcaaactt |
29182893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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