View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2241_high_12 (Length: 249)
Name: NF2241_high_12
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2241_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 44879545 - 44879327
Alignment:
| Q |
16 |
attatgacagtcaattttgtgcgtggagatgtgattttgacgtgaagtccatgtggatcgtcacatattgatttaacgtgtcacacgatgttgtctaatg |
115 |
Q |
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| T |
44879545 |
attatgacagtcaattttgtgcgtggagatgtgattttgacgtgaagtccatgtggatcgtcacatattcatttaacgtgtcacacgatgttgtctaatg |
44879446 |
T |
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| Q |
116 |
aatgaatttaatgcagggactgtttgattgatgcgtcacagggagagaagttttgctttcagtaaaatttgttgccaacagtttatatattttgtaggtg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44879445 |
aatgaatttaatgcagggactgtttgattgatgcgtcacagggagagaagttttgctttcagtaaaatttgttgccaacagtttatatattttgtaggtg |
44879346 |
T |
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| Q |
216 |
ggtttggaagtgtgtataa |
234 |
Q |
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| T |
44879345 |
gatttggaagtgtgtataa |
44879327 |
T |
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