View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2241_high_2 (Length: 561)
Name: NF2241_high_2
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2241_high_2 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 48701837 - 48702357
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701837 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
48701936 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48701937 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg |
48702036 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702037 |
agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
48702136 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggcagcgt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48702137 |
tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgt |
48702236 |
T |
|
| Q |
420 |
gtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggctt |
519 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702237 |
gtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggctt |
48702336 |
T |
|
| Q |
520 |
taccactttcctgtgttcaca |
540 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48702337 |
taccactttcctgtgttcaca |
48702357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Original strand, 48697147 - 48697670
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa-aa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48697147 |
aacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaa |
48697246 |
T |
|
| Q |
119 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48697247 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag |
48697346 |
T |
|
| Q |
219 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttc |
318 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697347 |
gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc |
48697446 |
T |
|
| Q |
319 |
ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggcagcg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48697447 |
ttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagca |
48697546 |
T |
|
| Q |
419 |
tgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697547 |
tgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggct |
48697646 |
T |
|
| Q |
519 |
ttaccactttcctgtgttcacaat |
542 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
48697647 |
ttaccactttcctgtgttcacaat |
48697670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 30945493 - 30946030
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30945493 |
aacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-aaaaaat |
30945591 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945592 |
cacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
30945691 |
T |
|
| Q |
220 |
agaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tcta-----aacaa------ |
305 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||| |
|
|
| T |
30945692 |
agaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagtt |
30945791 |
T |
|
| Q |
306 |
---gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaa |
401 |
Q |
| |
|
| |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30945792 |
gttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaa |
30945891 |
T |
|
| Q |
402 |
ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca |
501 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945892 |
ttgcatttatggcagcatgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca |
30945991 |
T |
|
| Q |
502 |
cttcaacaaaagtggctttaccactttcctgtgttcaca |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945992 |
cttcaacaaaagtggctttaccactttcctgtgttcaca |
30946030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Original strand, 30950199 - 30950738
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30950199 |
aacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-aaaaaac |
30950297 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30950298 |
cacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaatagg |
30950397 |
T |
|
| Q |
220 |
agaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tcta-----aacaa------ |
305 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||| |
|
|
| T |
30950398 |
agaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagtt |
30950497 |
T |
|
| Q |
306 |
---gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaa |
401 |
Q |
| |
|
| |||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30950498 |
gttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaa |
30950597 |
T |
|
| Q |
402 |
ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950598 |
ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca |
30950697 |
T |
|
| Q |
502 |
cttcaacaaaagtggctttaccactttcctgtgttcacaat |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950698 |
cttcaacaaaagtggctttaccactttcctgtgttcacaat |
30950738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 42266204 - 42265883
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266204 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
42266105 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266104 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
42266005 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266004 |
agaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
42265905 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggat |
341 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42265904 |
tgtgttgttactgatttgggat |
42265883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 42270923 - 42270602
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270923 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
42270824 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270823 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
42270724 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270723 |
agaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
42270624 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggat |
341 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42270623 |
tgtgttgttactgatttgggat |
42270602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 24520041 - 24520363
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520041 |
aacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
24520140 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520141 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg |
24520240 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520241 |
agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
24520340 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatg |
342 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
24520341 |
tgtgttgttactgatttgggatg |
24520363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 10427581 - 10427315
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10427581 |
aacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaacaaataaggggaaaaaac |
10427482 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
218 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
10427481 |
tacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctctt-gaaatag |
10427384 |
T |
|
| Q |
219 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
295 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
10427383 |
gagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
10427315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 48783026 - 48782850
Alignment:
| Q |
22 |
caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca |
121 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||| |||||||| || |
|
|
| T |
48783026 |
caaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatattt-acgtggaaatttctcaacaaataaagggaaaaa--ca |
48782930 |
T |
|
| Q |
122 |
cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
48782929 |
tgggg---------agaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat |
48782850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
| Q |
128 |
aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca |
227 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||| ||||||||| |||| ||||||| ||| | |||||||||||||||||||| |||||||| |
|
|
| T |
1979375 |
aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- |
1979281 |
T |
|
| Q |
228 |
aactaacacaaactaggagaaacctcaca |
256 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| |
|
|
| T |
1979280 |
-actagcactaaccaggagaaacctcaca |
1979253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
| Q |
57 |
aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa |
155 |
Q |
| |
|
||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| || ||||||| |||||||||| ||||||||| |
|
|
| T |
17248112 |
aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa |
17248015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
| Q |
70 |
aacacacaatattttacgtggaaacccctcaacaaataa |
108 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1979604 |
aacacacaatattt-acgtggaaacccctcaacaaataa |
1979567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 17)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 20 - 541
Target Start/End: Original strand, 5198671 - 5199192
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198671 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
5198770 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5198771 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg |
5198870 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198871 |
agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
5198970 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggcagcgt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5198971 |
tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgt |
5199070 |
T |
|
| Q |
420 |
gtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggctt |
519 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5199071 |
gtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggctt |
5199170 |
T |
|
| Q |
520 |
taccactttcctgtgttcacaa |
541 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
5199171 |
taccactttcctatgttcacaa |
5199192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 15603175 - 15602905
Alignment:
| Q |
23 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
122 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15603175 |
aaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
15603076 |
T |
|
| Q |
123 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| |||| ||||||||||| |
|
|
| T |
15603075 |
ggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggaga |
15602976 |
T |
|
| Q |
223 |
atacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctca |
293 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||| || | || ||||||||||| ||||||||||| |||||| |
|
|
| T |
15602975 |
atactaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca |
15602905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 825780 - 825632
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
825780 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaaa |
825681 |
T |
|
| Q |
119 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825680 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
825632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 830436 - 830288
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaa |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
830436 |
aacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaa |
830337 |
T |
|
| Q |
119 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
167 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
830336 |
ccacggggcaagagtggagaactttcactaagtggaagaaattacagga |
830288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 28716061 - 28715816
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| | |
|
|
| T |
28716061 |
aacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataaggggaaaaa-c |
28715964 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||| | |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | || |||||||||| |
|
|
| T |
28715963 |
cacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcctataaatagg |
28715864 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttt |
271 |
Q |
| |
|
||||| |||||||| | ||||||||||||| ||| ||||||||| |||| |
|
|
| T |
28715863 |
agaat----actaacactacctaggagaaaccttacaagagaaactattttt |
28715816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 295
Target Start/End: Original strand, 30396929 - 30397191
Alignment:
| Q |
22 |
caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||| || |
|
|
| T |
30396929 |
caaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataagggaaaaaaatca |
30397026 |
T |
|
| Q |
122 |
cggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagga |
220 |
Q |
| |
|
| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||| |||| | || |||||||| |
|
|
| T |
30397027 |
cagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctctatgtt-gaaatagga |
30397124 |
T |
|
| Q |
221 |
gaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
295 |
Q |
| |
|
||||| ||| ||||||||||| |||||||||||||||| ||| ||||||||||| || |||||||| |
|
|
| T |
30397125 |
gaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact |
30397191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 830291 - 830209
Alignment:
| Q |
217 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat |
297 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
830209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 825635 - 825553
Alignment:
| Q |
217 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat |
297 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
825635 |
aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactat |
825553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 13843865 - 13844014
Alignment:
| Q |
73 |
acacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct |
172 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| | || || |||| |||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
13843865 |
acacaatattt-acgtggaaacccctcaacaaataaggagaaaaatt-ataggttaaaagtatagaattttcattaagtggaagaaattacaggacccct |
13843962 |
T |
|
| Q |
173 |
ctctaaatacaaggagagtacaattaccactctctcttataaataggagaat |
224 |
Q |
| |
|
| |||||||||| ||| || |||||||||||| | ||| |||||||||||| |
|
|
| T |
13843963 |
ttataaatacaagaagaataaaattaccactctattttaaaaataggagaat |
13844014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 31592926 - 31593068
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||| ||||||||||| ||| || |||||||||||||||||||||||| |||| |||||| |||||||||||| | ||||| |||||| | ||||||| |
|
|
| T |
31592926 |
aacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaataaataa-gaaaaaaaac |
31593024 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattaca |
164 |
Q |
| |
|
||| | |||||||||||||||||||||| | ||||||||||| |
|
|
| T |
31593025 |
cac-agataagagtagagaactttcactaaccgaaagaaattaca |
31593068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 99 - 226
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
| Q |
99 |
caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta |
198 |
Q |
| |
|
||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| | |||||||| ||||| ||| |||||||||||| |
|
|
| T |
8004292 |
caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta |
8004194 |
T |
|
| Q |
199 |
ccactctctcttataaataggagaatac |
226 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8004193 |
-cactctctcttataaataggagaatac |
8004167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 451 - 522
Target Start/End: Original strand, 34614229 - 34614301
Alignment:
| Q |
451 |
atgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaa-gtggctttac |
522 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
34614229 |
atgtaaacatagaaattacatgctaacatgttttactgccatgtgacaacaattcaacaaaaggtggctttac |
34614301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 13840256 - 13840456
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||||| | || ||||| ||| |||||| ||||||| ||||||| |||||| || || || |||||||||| |||||| |||| |
|
|
| T |
13840256 |
aacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaacaaacaagggggaaaa-- |
13840350 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
|| || ||||||||||| || ||| || |||| || |||||||| ||||||||||||||| ||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
13840351 |
catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaattctctcttaaaaataaa |
13840449 |
T |
|
| Q |
220 |
agaatac |
226 |
Q |
| |
|
||||||| |
|
|
| T |
13840450 |
agaatac |
13840456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
| Q |
24 |
aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg |
123 |
Q |
| |
|
||||||||||||||| ||||||||| ||| || |||| || || ||||||||||||||||| |||||||| ||||| |||||| ||||||||| | |
|
|
| T |
12175768 |
aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt |
12175865 |
T |
|
| Q |
124 |
gggcaagagtagagaa |
139 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
12175866 |
ggacaagagtagagaa |
12175881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 415
Target Start/End: Complemental strand, 28715747 - 28715678
Alignment:
| Q |
345 |
tagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggca |
415 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
28715747 |
tagaatggtgcaagag-catgctatttataggagtgaaagaaccatgccccaaccatttacatttatggca |
28715678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 42117876 - 42117769
Alignment:
| Q |
65 |
aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca |
164 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| ||||| |||||||||| ||||||||| | ||| |||||| |||||||| ||| | |||||||| | |
|
|
| T |
42117876 |
aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttcattaaacgagagaaattata |
42117779 |
T |
|
| Q |
165 |
ggacctctct |
174 |
Q |
| |
|
||||||||| |
|
|
| T |
42117778 |
agacctctct |
42117769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 9358163 - 9358207
Alignment:
| Q |
24 |
aaatattatcacgcagctaaaataagagacgagaaaagaggaact |
68 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||||| ||||| |
|
|
| T |
9358163 |
aaatattattacgcagctaaaacaacagacgagaaaagaagaact |
9358207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 27878725 - 27879263
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878725 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
27878824 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878825 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
27878924 |
T |
|
| Q |
220 |
agaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tcta-----aacaa------ |
305 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||| |
|
|
| T |
27878925 |
agaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagtt |
27879024 |
T |
|
| Q |
306 |
---gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaa |
401 |
Q |
| |
|
| |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27879025 |
gttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaa |
27879124 |
T |
|
| Q |
402 |
ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27879125 |
ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca |
27879224 |
T |
|
| Q |
502 |
cttcaacaaaagtggctttaccactttcctgtgttcaca |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27879225 |
cttcaacaaaagtggctttaccactttcctgtgtccaca |
27879263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 26976147 - 26976470
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976147 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
26976246 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976247 |
caaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg |
26976346 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976347 |
agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
26976446 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatga |
343 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26976447 |
tgtgttgttactgatttgggatga |
26976470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 1235002 - 1234680
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235002 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
1234903 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1234902 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg |
1234803 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234802 |
agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
1234703 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatg |
342 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1234702 |
tgtgttgttactgatttgggatg |
1234680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 27874006 - 27874327
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27874006 |
aacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggaaaaaac |
27874105 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874106 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
27874205 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874206 |
agaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
27874305 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggat |
341 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
27874306 |
tgtgttgttactgatttgggat |
27874327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 18968178 - 18967912
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18968178 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaacaaataaggggaaaaaac |
18968079 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||| | ||||||| | |||||| |
|
|
| T |
18968078 |
cacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-ctctctcat-gaaatag |
18967981 |
T |
|
| Q |
219 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
295 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||| ||| |||| ||||||||| |||||||| |
|
|
| T |
18967980 |
gagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact |
18967912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 30986813 - 30986552
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctcaacaaataaggggaaaa |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||| |
|
|
| T |
30986813 |
aacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctcaacaaataaggaaaaaa |
30986715 |
T |
|
| Q |
117 |
aa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataa |
214 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
30986714 |
aaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattaccactctctcttgtaa |
30986615 |
T |
|
| Q |
215 |
ataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactaatt-tttctctcta |
279 |
Q |
| |
|
|||| ||||| ||| |||| | ||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
30986614 |
atagaagaat----actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta |
30986552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 50 - 292
Target Start/End: Complemental strand, 30966923 - 30966683
Alignment:
| Q |
50 |
agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30966923 |
agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta |
30966825 |
T |
|
| Q |
149 |
agtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaa |
248 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||| | | | ||||||||| |
|
|
| T |
30966824 |
agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaa |
30966729 |
T |
|
| Q |
249 |
acctcac-aggagaaactaatt-tttctctctatattttttctctc |
292 |
Q |
| |
|
||||||| || |||||||| || ||||||||||||||||||||||| |
|
|
| T |
30966728 |
acctcacaagtagaaactatttctttctctctatattttttctctc |
30966683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 21966841 - 21966677
Alignment:
| Q |
28 |
attatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggc |
127 |
Q |
| |
|
||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| |||||| |||||||| | | ||||| |
|
|
| T |
21966841 |
attatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataaagggaaaaatc-atggggc |
21966745 |
T |
|
| Q |
128 |
aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa |
195 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| |||||||||| |
|
|
| T |
21966744 |
aagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa |
21966677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 23012520 - 23012667
Alignment:
| Q |
23 |
aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| | ||| |||||||| |
|
|
| T |
23012520 |
aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggggaaaaacca |
23012617 |
T |
|
| Q |
122 |
cggggcaagagtagagaactttcactaagtggaagaaattacaggacctct |
172 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
23012618 |
-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct |
23012667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 30986478 - 30986430
Alignment:
| Q |
362 |
catgctatttatactagtgaaagagtcatgccccaaccaattgcattta |
410 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| |||||| |
|
|
| T |
30986478 |
catgctatttatattagtgaaagagccatgccccaaccaattacattta |
30986430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 30966605 - 30966566
Alignment:
| Q |
362 |
catgctatttatactagtgaaagagtcatgccccaaccaa |
401 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30966605 |
catgctatttatactagtgaaagagccatgccccaaccaa |
30966566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 30967709 - 30967674
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacga |
55 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30967709 |
aacaaaatattatcaagcagctaaaataagagacga |
30967674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 29585316 - 29585826
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585316 |
aacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
29585415 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29585416 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactctctcttataaatagg |
29585515 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaagctttacttgttc |
318 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
29585516 |
agaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctagacaagctttacttgttg |
29585615 |
T |
|
| Q |
319 |
ttgtgttgttactgatttgggatgagtagaatggtgcaa-gggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggcagc |
417 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||| || ||| | ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29585616 |
ttgtgttgttactgatttgggatga--tgtgtggaacaatggtaca----------aatagtgaaagagccatgccccaaccaattgcatttatggcagc |
29585703 |
T |
|
| Q |
418 |
gtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29585704 |
gtgtgaattttcaactttgcatagtaactttccatgtgaacataaaaactacatgccaacatgttttactgccatgtgataacaattcaacaaaagtggc |
29585803 |
T |
|
| Q |
518 |
tttaccactttcctgtgttcaca |
540 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
29585804 |
tttaccactttcctgtgttcaca |
29585826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 41718711 - 41718357
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718711 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
41718612 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41718611 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg |
41718512 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718511 |
agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
41718412 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718411 |
tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
41718357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 41723437 - 41723083
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723437 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
41723338 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41723337 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg |
41723238 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723237 |
agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
41723138 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723137 |
tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
41723083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 23 - 343
Target Start/End: Complemental strand, 34352546 - 34352226
Alignment:
| Q |
23 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352546 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
34352447 |
T |
|
| Q |
123 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352446 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga |
34352347 |
T |
|
| Q |
223 |
atacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttcttgt |
322 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352346 |
atactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttcttgt |
34352247 |
T |
|
| Q |
323 |
gttgttactgatttgggatga |
343 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34352246 |
gttgttactgatttgggatga |
34352226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 34360257 - 34359934
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34360257 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaacaaataaggggaaaaaac |
34360158 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360157 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg |
34360058 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360057 |
agaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
34359958 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatga |
343 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34359957 |
tgtgttgttactgatttgggatga |
34359934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 2817279 - 2817788
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2817279 |
aacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-aaaaaac |
2817377 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct--tataaata |
217 |
Q |
| |
|
||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
2817378 |
cacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaata |
2817477 |
T |
|
| Q |
218 |
ggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatc-taaacaagctttacttgt |
316 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| || |||| ||||||||||||||||||||| || | |||||||| ||||||||| |
|
|
| T |
2817478 |
ggagaatactaactaatacaaactaggagaaac--------------tatttttcctctctatattttttctctcattaccctaaacaagttttacttgt |
2817563 |
T |
|
| Q |
317 |
tcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggcag |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2817564 |
tcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtgaaagagccatgccccaaccaattgcatttatggcag |
2817663 |
T |
|
| Q |
417 |
cgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtgg |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2817664 |
cgtgtgaattttcaactttgcatagtaacttcccatgtgaacatagaaattacatgccaacatattttactgccatgtgataacaattcaacaaaagtgg |
2817763 |
T |
|
| Q |
517 |
cttta-ccactttcctgtgttcaca |
540 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
2817764 |
ctttatgcactttcctgtgttcaca |
2817788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 5823291 - 5823613
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823291 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
5823390 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823391 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg |
5823490 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823491 |
agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
5823590 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatg |
342 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5823591 |
tgtgttgttactgatttgggatg |
5823613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 5818529 - 5818852
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5818529 |
aacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaactaataaggggaaaaaac |
5818628 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818629 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg |
5818728 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818729 |
agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
5818828 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatga |
343 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5818829 |
tgtgttgttactgatttgggatga |
5818852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 54546184 - 54545906
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54546184 |
aacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaacaaataaggggaaaaaac |
54546086 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54546085 |
cacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg |
54545986 |
T |
|
| Q |
220 |
agaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat |
297 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54545985 |
agaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
54545906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 24659155 - 24659287
Alignment:
| Q |
23 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
122 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24659155 |
aaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
24659254 |
T |
|
| Q |
123 |
ggggcaagagtagagaactttcactaagtggaaga |
157 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
24659255 |
ggggcaagagt--agaactttcactaagtggaaga |
24659287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 4579352 - 4579254
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579352 |
aacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
4579254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 31204783 - 31204950
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
31204783 |
aacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaaat |
31204880 |
T |
|
| Q |
120 |
cacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
190 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| | |||||||| || ||||||||||| |||||||| |
|
|
| T |
31204881 |
cacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag |
31204950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 295
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
| Q |
157 |
aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca |
256 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
24671173 |
aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca |
24671262 |
T |
|
| Q |
257 |
ggagaaactaatttttctctctatattttttctctcact |
295 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
24671263 |
ggagaaactatatttcctctctatatttttcctctcact |
24671301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
| Q |
42 |
aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaac |
140 |
Q |
| |
|
|||||||||| |||||||||| || |||||| ||||||||| |||| ||| || |||||| ||| |||||||| ||| |||||||||| | || |
|
|
| T |
35977258 |
aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt |
35977162 |
T |
|
| Q |
141 |
tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac |
199 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
35977161 |
tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac |
35977103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 4579241 - 4579126
Alignment:
| Q |
170 |
tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt |
269 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| | |||||||||||||| |||| ||| ||||||||||||||||||||||| | |
|
|
| T |
4579241 |
tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat |
4579152 |
T |
|
| Q |
270 |
tttctctctatattttttctctcact |
295 |
Q |
| |
|
|| |||||||||||||| |||||||| |
|
|
| T |
4579151 |
ttcctctctatatttttcctctcact |
4579126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 9439388 - 9439710
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439388 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
9439487 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9439488 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg |
9439587 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439588 |
agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
9439687 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatg |
342 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9439688 |
tgtgttgttactgatttgggatg |
9439710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 9444108 - 9444430
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444108 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
9444207 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9444208 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatagg |
9444307 |
T |
|
| Q |
220 |
agaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttct |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444308 |
agaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttct |
9444407 |
T |
|
| Q |
320 |
tgtgttgttactgatttgggatg |
342 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9444408 |
tgtgttgttactgatttgggatg |
9444430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
| Q |
21 |
acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca |
77 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
4799371 |
acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca |
4799315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 16183647 - 16183913
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183647 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
16183746 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
16183747 |
cacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctctctt-gaaatag |
16183844 |
T |
|
| Q |
219 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
295 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
16183845 |
gagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
16183913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 30235321 - 30235043
Alignment:
| Q |
22 |
caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa-cc |
120 |
Q |
| |
|
||||||||||| || |||||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |
|
|
| T |
30235321 |
caaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacgaataaggggaaaaaaacc |
30235223 |
T |
|
| Q |
121 |
acggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctc-taaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
||||| ||||||||| |||||||| ||| | ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30235222 |
acgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattaccactctctcttataaatagg |
30235123 |
T |
|
| Q |
220 |
agaatacaa--actaacacaaactaggagaaacctca-caggagaaactaatttttctctctatattttttctctcacta |
296 |
Q |
| |
|
||||||||| |||||||| | || ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30235122 |
agaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcacta |
30235043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 8139980 - 8140183
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||| ||||| |
|
|
| T |
8139980 |
aacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaatattt-atgtggaaacccctcaacaaataaggggagaaaac |
8140078 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
219 |
Q |
| |
|
|| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| ||||||||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
8140079 |
catggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc-ctctctctt-gaaatagg |
8140176 |
T |
|
| Q |
220 |
agaatac |
226 |
Q |
| |
|
||||||| |
|
|
| T |
8140177 |
agaatac |
8140183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 8138478 - 8138645
Alignment:
| Q |
22 |
caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca |
121 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||| |||||||| || || | |||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
8138478 |
caaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaacaaacaaggggagaaaacca |
8138576 |
T |
|
| Q |
122 |
cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
190 |
Q |
| |
|
|| ||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
8138577 |
cgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag |
8138645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 5102609 - 5102749
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
118 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| |||||||||||||||||||| |
|
|
| T |
5102609 |
aacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaaaa- |
5102705 |
T |
|
| Q |
119 |
ccacggggcaagagtagagaactttcactaagtggaagaaatta |
162 |
Q |
| |
|
||| || ||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
5102706 |
ccatggagcaagagtagataacttttactaagtgggagaaatta |
5102749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 30234974 - 30234920
Alignment:
| Q |
361 |
acatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggca |
415 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
30234974 |
acatgctatttatactagtgaaagagccatgccccaaccaattacatttatggca |
30234920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 36528445 - 36528529
Alignment:
| Q |
34 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
36528445 |
acgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacgaataaggaaaaaaaac |
36528529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 27242 - 27508
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27242 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaacaaataaggggaaaaaac |
27341 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
27342 |
cacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca-tctctctt-gaaatag |
27439 |
T |
|
| Q |
219 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
295 |
Q |
| |
|
| |||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
27440 |
gtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
27508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 46191530 - 46191266
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46191530 |
aacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaacaaataaggggaaaaaac |
46191433 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||| ||||||| ||||||||| |||||| |
|
|
| T |
46191432 |
cacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-ctctctctt-gaaatag |
46191335 |
T |
|
| Q |
219 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
295 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
46191334 |
gagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
46191266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 30697131 - 30697300
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
30697131 |
aacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataaggggaaaaagc |
30697229 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
190 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
30697230 |
cacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag |
30697300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 4130385 - 4130215
Alignment:
| Q |
20 |
aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
4130385 |
aacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaacaaataaagggaaaaaac |
4130287 |
T |
|
| Q |
120 |
cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4130286 |
cacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag |
4130215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
| Q |
146 |
ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac |
226 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||| | |||||||| ||||||| || |||||||| | ||||||||||||| |
|
|
| T |
30674787 |
ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac |
30674865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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