View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2241_high_7 (Length: 299)

Name: NF2241_high_7
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2241_high_7
NF2241_high_7
[»] chr5 (4 HSPs)
chr5 (20-219)||(27639396-27639595)
chr5 (225-294)||(27639260-27639329)
chr5 (73-162)||(3465307-3465396)
chr5 (71-152)||(41650524-41650605)
[»] chr4 (9 HSPs)
chr4 (70-201)||(45068090-45068221)
chr4 (71-201)||(19469647-19469776)
chr4 (84-171)||(50655070-50655157)
chr4 (91-169)||(4866798-4866876)
chr4 (72-160)||(23012347-23012435)
chr4 (70-158)||(30251406-30251494)
chr4 (91-162)||(44616665-44616736)
chr4 (70-162)||(24065104-24065196)
chr4 (72-133)||(48309656-48309717)
[»] chr1 (8 HSPs)
chr1 (73-160)||(13297595-13297682)
chr1 (48-162)||(52372646-52372760)
chr1 (70-171)||(44503950-44504051)
chr1 (70-158)||(21926617-21926704)
chr1 (73-192)||(9644372-9644491)
chr1 (70-192)||(40799649-40799771)
chr1 (70-160)||(25410579-25410669)
chr1 (72-133)||(51871203-51871264)
[»] chr6 (2 HSPs)
chr6 (72-198)||(9557337-9557463)
chr6 (73-162)||(51995-52084)
[»] chr2 (3 HSPs)
chr2 (73-160)||(43411515-43411602)
chr2 (72-133)||(10994432-10994493)
chr2 (69-160)||(41074569-41074659)
[»] chr7 (4 HSPs)
chr7 (70-160)||(40188193-40188283)
chr7 (70-132)||(46028474-46028536)
chr7 (70-160)||(23176908-23176998)
chr7 (73-160)||(12258376-12258463)
[»] chr3 (7 HSPs)
chr3 (48-157)||(26982040-26982149)
chr3 (70-160)||(34213146-34213236)
chr3 (72-136)||(1045402-1045466)
chr3 (72-130)||(2833336-2833394)
chr3 (78-118)||(1762040-1762080)
chr3 (70-160)||(4778030-4778120)
chr3 (72-160)||(41640824-41640912)
[»] chr8 (8 HSPs)
chr8 (72-160)||(24604837-24604925)
chr8 (70-162)||(34152023-34152115)
chr8 (70-171)||(42032731-42032832)
chr8 (70-162)||(7656805-7656897)
chr8 (73-162)||(42241233-42241322)
chr8 (70-118)||(41927018-41927066)
chr8 (91-202)||(32073896-32074007)
chr8 (72-133)||(36650463-36650524)
[»] scaffold0329 (1 HSPs)
scaffold0329 (71-162)||(18430-18521)
[»] scaffold0042 (1 HSPs)
scaffold0042 (73-141)||(83243-83311)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 27639595 - 27639396
Alignment:
Q  20 gacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttggaagtggttcatggctaaa 119  Q
    ||||||||  ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27639595 gacttacataaatgactttatgtttgctggtggcacccatagtgagcagactgtggtggatagagcaaaattcttagcttggaagtggttcatggctaaa 27639496  T
Q  120 tgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcctttacaggaattggtagggttttgtggtggtggcctaccttggttcgcgcg 219  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||||||| | |||| ||||||||||||||||||||||||||||||||| ||||    
T  27639495 tgtcctgctagttcttgcacttatcatgagtaggaggtgcaacccgtcctttactgaaattagtagggttttgtggtggtggcctaccttggttcacgcg 27639396  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 27639329 - 27639260
Alignment:
Q  225 tgggttctctcttggccttcctcctttggtggcaggtgttttgtgctctttttggtggatctgtgctcct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27639329 tgggttctctcttggccttcctcctttggtggcaggtgttttgcgctctttttggtggatctgtgctcct 27639260  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 3465396 - 3465307
Alignment:
Q  73 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 162  Q
    ||||||||||||| ||| |||||||||||||||| ||| |||| ||  || || ||||||| |||||||| |||||||||||||||||||    
T  3465396 tggtggatagagcgaaactcttagcttggaagtgtttcttggcgaagcgttctactagttcctgcacttaccatgagtgggaggtgcaac 3465307  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 41650524 - 41650605
Alignment:
Q  71 tgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgg 152  Q
    ||||||||||||||| ||| |||||||||||||||||||| ||||||| ||  ||||||| || |||||||| |||||||||    
T  41650524 tgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgctctgctagctcctgcacttaccatgagtgg 41650605  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 45068221 - 45068090
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 169  Q
    |||| ||||||||||||||| |||||||||||||||||||| ||||||| || ||||  ||||| | ||||||||||||| ||||||||||||  |||||    
T  45068221 ctgtagtggatagagctaaactcttagcttggaagtggttcctggctaagtgccctggcagttcctacacttatcatgagggggaggtgcaacccgtcct 45068122  T
Q  170 ttacaggaattggtagggttttgtggtggtgg 201  Q
    ||   || ||  ||||||||||||||||||||    
T  45068121 ttgttggtatcagtagggttttgtggtggtgg 45068090  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 19469647 - 19469776
Alignment:
Q  71 tgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcctt 170  Q
    ||||||||||||||| || ||||||||||||||||||||| | | ||| |||| ||||||||| |||||||||||||||||||||||| | | |||||||    
T  19469647 tgtggtggatagagcaaagttcttagcttggaagtggttcctagttaagtgtc-tgctagttcctgcacttatcatgagtgggaggtgtagcctgtcctt 19469745  T
Q  171 tacaggaattggtagggttttgtggtggtgg 201  Q
    |   || || |||||| ||||||||||||||    
T  19469746 tgttggcatcggtaggattttgtggtggtgg 19469776  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 50655157 - 50655070
Alignment:
Q  84 gctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtccttt 171  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||||||||||  ||  ||||||||||||||||||| ||||||||    
T  50655157 gctaaactcttagcttggaagtggttcctggctaagtgtcctgctagttcttgctttttccatgagtgggaggtgcaacctgtccttt 50655070  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 4866798 - 4866876
Alignment:
Q  91 tcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 169  Q
    |||||||||||||||||||| ||||||| || | ||||||| |||||||||||||||||||||||||||||| ||||||    
T  4866798 tcttagcttggaagtggttcctggctaagtgccttgctagtccttgcacttatcatgagtgggaggtgcaacctgtcct 4866876  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 23012435 - 23012347
Alignment:
Q  72 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    |||||||||||||  ||| |||||| |||||| |||||||||||||| |||  ||||||||  |||||||||||||| |||||||||||    
T  23012435 gtggtggatagagtgaaactcttagtttggaattggttcatggctaagtgttgtgctagtttctgcacttatcatgaatgggaggtgca 23012347  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 30251494 - 30251406
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtg 158  Q
    |||||||||||||||  ||| |||| ||||| ||||||||| ||||||| || ||||  ||||||||| ||  ||||||||||||||||    
T  30251494 ctgtggtggatagagtgaaactcttggcttgaaagtggttcctggctaagtgccctggaagttcttgctctgttcatgagtgggaggtg 30251406  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 44616736 - 44616665
Alignment:
Q  91 tcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 162  Q
    |||||||||| |||||| ||||||||||  | | ||||| ||||||||||||  ||||||||||||||||||    
T  44616736 tcttagcttgtaagtggctcatggctaagggccttgctaattcttgcacttacgatgagtgggaggtgcaac 44616665  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 24065196 - 24065104
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 162  Q
    |||||||||||||||  ||| ||||| | |||||||||||||||||||| |  ||||||||||| ||   |||| |||| |||||||| ||||    
T  24065196 ctgtggtggatagagtgaaactcttaacctggaagtggttcatggctaagtaccctgctagttcctgttgttattatgaatgggaggtacaac 24065104  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 48309717 - 48309656
Alignment:
Q  72 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 133  Q
    |||||||||||||  ||| ||||||||||||||| ||||  |||||| | ||||||||||||    
T  48309717 gtggtggatagagtgaaactcttagcttggaagtcgttccgggctaagtttcctgctagttc 48309656  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 13297595 - 13297682
Alignment:
Q  73 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    ||||||||||||  ||| |||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  13297595 tggtggatagagtgaaactcttagcttgaaattggttcatggctaagtgtcctgctagttcctgcacttatcatgagtgggaggtgca 13297682  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 52372646 - 52372760
Alignment:
Q  48 ggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatg 147  Q
    |||||| ||||||||| |  | |||||||||||||||| ||| ||||||||| |||||||||| ||||||  || ||||||||||| ||| ||| | |||    
T  52372646 ggtggcgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttagaagtggttcctggctaggtgccctgctagttcctgctctttttatg 52372745  T
Q  148 agtgggaggtgcaac 162  Q
    |||||||||||||||    
T  52372746 agtgggaggtgcaac 52372760  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 44504051 - 44503950
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 169  Q
    |||||||||||| ||  ||  ||||||||||||||||||||||| |||| |||| || |||||| ||| ||| |||||||||||||||||| || |||||    
T  44504051 ctgtggtggataaagtgaagctcttagcttggaagtggttcatgactaagtgtcgtggtagttcctgctcttttcatgagtgggaggtgcagctcgtcct 44503952  T
Q  170 tt 171  Q
    ||    
T  44503951 tt 44503950  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 21926617 - 21926704
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtg 158  Q
    |||||||||||||||  ||| ||||||| |||||||||||| ||||||| || ||||||||||| ||  ||||||||||||||||||||    
T  21926617 ctgtggtggatagagtgaaactcttagcctggaagtggttc-tggctaagtgccctgctagttcatgttcttatcatgagtgggaggtg 21926704  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 9644372 - 9644491
Alignment:
Q  73 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtccttta 172  Q
    ||||||||||||| ||| |||| | ||||||||||||| | ||||| |||||| ||||||||||| | | |||||| |||||||| || || |||||||     
T  9644372 tggtggatagagcgaaactcttgggttggaagtggttcctagctaagtgtcctactagttcttgctcctttcatgaatgggaggtacatctcgtcctttg 9644471  T
Q  173 caggaattggtagggttttg 192  Q
    | || || ||||||||||||    
T  9644472 ctggcatcggtagggttttg 9644491  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 40799649 - 40799771
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 169  Q
    |||||||||||||||  ||| |||| ||||| |||| |||| | ||||| ||   ||||||||||||| ||| |||||||||||||||||| || |||||    
T  40799649 ctgtggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttcttgctcttttcatgagtgggaggtgcagctcgtcct 40799748  T
Q  170 ttacaggaattggtagggttttg 192  Q
    || | || || ||||||||||||    
T  40799749 ttgctggcatcggtagggttttg 40799771  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 25410669 - 25410579
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    ||||| |||||||||  ||| |||||||||||||||||||| ||||||| |  | ||||||||| ||| |||   ||||||||||||||||    
T  25410669 ctgtgatggatagagtgaaactcttagcttggaagtggttcctggctaagtaccttgctagttcctgctctttctatgagtgggaggtgca 25410579  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 51871203 - 51871264
Alignment:
Q  72 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 133  Q
    ||||||||||||  |||| |||||||||||||||||||| || |||| || |||||||||||    
T  51871203 gtggtggatagaattaaactcttagcttggaagtggttcctgactaagtgccctgctagttc 51871264  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 9557463 - 9557337
Alignment:
Q  72 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtccttt 171  Q
    ||||||||| | || |||||||||||||||||||| ||| || |||| ||||||||||| || |||||||||||||||||||||||||| |  |||||||    
T  9557463 gtggtggatggggcaaaattcttagcttggaagtgattcctgactaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtccttt 9557364  T
Q  172 acaggaattggtagggttttgtggtgg 198  Q
     | ||  |||||||||||| |||||||    
T  9557363 gctggctttggtagggtttggtggtgg 9557337  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 51995 - 52084
Alignment:
Q  73 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 162  Q
    |||||||| |||||||| |||||||||||||||||||| ||||||| |||| |||||||||||||||||   ||||||||||||||||||    
T  51995 tggtggatcgagctaaactcttagcttggaagtggttcctggctaagtgtcttgctagttcttgcactttatatgagtgggaggtgcaac 52084  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 43411515 - 43411602
Alignment:
Q  73 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    ||||||||||||| ||| |||||||||| ||||| ||| ||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  43411515 tggtggatagagcgaaactcttagcttgaaagtgtttcctggctaagtgtcctgctagctcctgcacttatcatgagtgggaggtgca 43411602  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 10994432 - 10994493
Alignment:
Q  72 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 133  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||| || |||||||||||    
T  10994432 gtggtggatagagttaaactcttagcttggaagtggttcctggctaagtgccctgctagttc 10994493  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 41074659 - 41074569
Alignment:
Q  69 actgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    ||||||||||| | ||| ||| |||||||||| ||||||||| ||||||| || ||||||||| ||| ||||| |||||||||| |||||||    
T  41074659 actgtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgctagtcctt-cacttttcatgagtggaaggtgca 41074569  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 40188283 - 40188193
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    |||||||||||| ||| ||| || ||||||||||||||||| || |||| || |||||||||||||||||||||||||||| |||||||||    
T  40188283 ctgtggtggataaagcaaaactcatagcttggaagtggttcttgcctaagtgccctgctagttcttgcacttatcatgagtaggaggtgca 40188193  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 46028536 - 46028474
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagtt 132  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||    
T  46028536 ctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgtcctgctagtt 46028474  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 23176998 - 23176908
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    |||||||| ||||||  ||| |||||||||||||| ||||| | || || |||| ||||||||| |||||||||||||||| |||||||||    
T  23176998 ctgtggtgtatagagtgaaactcttagcttggaagcggttccttgccaagtgtcatgctagttcatgcacttatcatgagttggaggtgca 23176908  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 12258376 - 12258463
Alignment:
Q  73 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    |||||||||||| |||| |||||||||| ||||||||| ||||||| |||||||| ||| | ||| ||    ||||||||||||||||    
T  12258376 tggtggatagagttaaactcttagcttgaaagtggttcctggctaagtgtcctgccagtccctgctctctctatgagtgggaggtgca 12258463  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 26982149 - 26982040
Alignment:
Q  48 ggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatg 147  Q
    |||||||||| | ||| | || |||||||||||||||  ||| |||||||||||||||||||| ||||||| || ||||| ||||| ||||| |||||||    
T  26982149 ggtggcacccttcgtgaggagcctgtggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgcaagttcctgcacctatcatg 26982050  T
Q  148 agtgggaggt 157  Q
    ||||||||||    
T  26982049 agtgggaggt 26982040  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 34213146 - 34213236
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    |||| ||||||||||  ||| |||||||||||||||||||||||||||| || | ||||||||| ||||||||||| ||||| ||||||||    
T  34213146 ctgttgtggatagagtgaaactcttagcttggaagtggttcatggctaagtgccatgctagttcatgcacttatcacgagtgtgaggtgca 34213236  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 1045466 - 1045402
Alignment:
Q  72 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttg 136  Q
    ||||||||||| | |||| ||| |||||||||||||||| ||||||| || ||||||||||||||    
T  1045466 gtggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgctagttcttg 1045402  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 2833394 - 2833336
Alignment:
Q  72 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctag 130  Q
    ||||| |||||||  ||| |||||||||||||||||||||||||||| || ||||||||    
T  2833394 gtggtagatagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctag 2833336  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 1762080 - 1762040
Alignment:
Q  78 gatagagctaaattcttagcttggaagtggttcatggctaa 118  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  1762080 gatagagcgaaactcttagcttggaagtggttcatggctaa 1762040  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 4778030 - 4778120
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    ||||||||||||||| |||| |||||| |||||||||||||  |||||  || ||||||||| | ||| ||    ||||||||||||||||    
T  4778030 ctgtggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgctagtccctgctctctctatgagtgggaggtgca 4778120  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 41640824 - 41640912
Alignment:
Q  72 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    |||||||| |||| |||| ||||| |||||||||||||   |||||| || ||||||||||| ||| ||    ||||||||||||||||    
T  41640824 gtggtggacagagttaaactcttaacttggaagtggtttcgggctaagtgccctgctagttcctgctctccctatgagtgggaggtgca 41640912  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 24604837 - 24604925
Alignment:
Q  72 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 160  Q
    |||||||||||||| ||| |||||| ||| ||||||||| ||||||| || |||||||||| || | ||||||||||||||||||||||    
T  24604837 gtggtggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagttttttctcttatcatgagtgggaggtgca 24604925  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 34152115 - 34152023
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 162  Q
    |||| ||||||||||||||| |||||||||||||||||||| |||||||  | |||   ||||| ||||||| ||||||||||||||||||||    
T  34152115 ctgttgtggatagagctaaactcttagcttggaagtggttcctggctaagcgccctagcagttcctgcacttttcatgagtgggaggtgcaac 34152023  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 42032731 - 42032832
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 169  Q
    |||||||| ||||||| ||| |||||||||||||||||||| ||||||| || ||||||| ||| ||| | | | ||||||||||||||||||  |||||    
T  42032731 ctgtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtgggaggtgcaacccgtcct 42032830  T
Q  170 tt 171  Q
    ||    
T  42032831 tt 42032832  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 7656897 - 7656805
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 162  Q
    |||||||||||||||  ||| |||||  ||||||||||||| |  |||| |||||| ||| |||||||||||||||| |||| ||||||||||    
T  7656897 ctgtggtggatagagtgaaactcttaatttggaagtggttcctaactaagtgtcctactaattcttgcacttatcattagtgagaggtgcaac 7656805  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 42241322 - 42241233
Alignment:
Q  73 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 162  Q
    ||||||||| ||| ||| |||||||||||||||||||| |||| ||  |  || ||||||| |||||||| | |||||||||||||||||    
T  42241322 tggtggataaagcgaaactcttagcttggaagtggttcctggcgaagcgctctactagttcctgcacttaccttgagtgggaggtgcaac 42241233  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 41927018 - 41927066
Alignment:
Q  70 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaa 118  Q
    |||||||||||||||| ||  |||||||||||||||||||| |||||||    
T  41927018 ctgtggtggatagagcgaatctcttagcttggaagtggttcctggctaa 41927066  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 32074007 - 32073896
Alignment:
Q  91 tcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcctttacaggaattggtagggttt 190  Q
    |||||| ||||||||| ||  ||||||| |||||| ||||||| ||| | | | |||||||||||| ||| |  ||||| ||| ||||  ||||||| ||    
T  32074007 tcttagtttggaagtgatttctggctaagtgtcctactagttcctgctccttttatgagtgggaggcgcagcccgtcctgtactggaaccggtagggctt 32073908  T
Q  191 tgtggtggtggc 202  Q
    ||||||||||||    
T  32073907 tgtggtggtggc 32073896  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 36650524 - 36650463
Alignment:
Q  72 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 133  Q
    |||||||| |||| |||| ||||||||||| ||||||||  |||||| |||| |||||||||    
T  36650524 gtggtggacagagttaaactcttagcttgggagtggttccgggctaagtgtcttgctagttc 36650463  T

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Target: scaffold0329 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 18521 - 18430
Alignment:
Q  71 tgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 162  Q
    ||||||||||||||| ||| || ||| ||| ||||| |||  |||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  18521 tgtggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctgcacttatcatgagtgggaggtgcaac 18430  T

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Target: scaffold0042 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 83311 - 83243
Alignment:
Q  73 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcactt 141  Q
    ||||||||| ||  ||| ||||||||||||||||||||||| | || ||||||||||||||||||||||    
T  83311 tggtggataaagtcaaactcttagcttggaagtggttcatgccgaagtgtcctgctagttcttgcactt 83243  T

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