View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2241_low_10 (Length: 293)

Name: NF2241_low_10
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2241_low_10
NF2241_low_10
[»] chr5 (11 HSPs)
chr5 (4-276)||(15823549-15823821)
chr5 (152-262)||(15836259-15836369)
chr5 (74-206)||(15813433-15813562)
chr5 (53-131)||(15721058-15721136)
chr5 (56-204)||(15723495-15723640)
chr5 (152-261)||(15819204-15819313)
chr5 (10-99)||(15819363-15819452)
chr5 (74-131)||(15717236-15717293)
chr5 (74-204)||(15729716-15729844)
chr5 (10-99)||(15836413-15836502)
chr5 (4-80)||(15837838-15837909)
[»] chr2 (1 HSPs)
chr2 (74-206)||(33100110-33100239)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 4 - 276
Target Start/End: Complemental strand, 15823821 - 15823549
Alignment:
Q  4 ttttttcttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcaggaacaccacaacgtggtaacaag 103  Q
    ||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  15823821 tttttccttagtaaatcacttgtttcctttgggaaacgacttatcattggtgaagctgtactcgaaattcatatcaggaacaccacatcgtggtaacaag 15823722  T
Q  104 atttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatcttaatggctgagattgtttgttggtctagaa 203  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15823721 atttgttgtgaagtctcagtgtttaggtagccattagtaacttggagattgaaattttgttggtagatcttaatggctgacattgtttgttggtctagaa 15823622  T
Q  204 cattactgaatggcccatattgttggaggtagccgaaatcgtacaaatattgtttgattcgatataggccttg 276  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  15823621 cattattgaatggcccatattgttggaggtagccgaaatagtacaaatattgtttgatttgatataggccttg 15823549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 15836369 - 15836259
Alignment:
Q  152 ttgaaattttgttggtagatcttaatggctgagattgtttgttggtctagaacattactgaatggcccatattgttggaggtagccgaaatcgtacaaat 251  Q
    ||||||| | |||||||| |||||| |||| ||| ||||| ||||||||||   ||| |||| |||||| |||||| |||||||||||||||| ||||||    
T  15836369 ttgaaatatcgttggtaggtcttaagggctaagactgtttcttggtctagagtgttattgaacggcccagattgttcgaggtagccgaaatcggacaaat 15836270  T
Q  252 attgtttgatt 262  Q
    |||||||||||    
T  15836269 attgtttgatt 15836259  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 15813562 - 15813433
Alignment:
Q  74 atatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatct 173  Q
    |||||||||| |||||| || |||||| |||||| |||| ||||||||||||||||||    | ||||||||||||| ||||||  |||||||||| |||    
T  15813562 atatcaggaataccacatcgcggtaacgagattttttgtaaagtctcggtgtttaggt---taccagtaacttggagattgaaaaattgttggtaggtct 15813466  T
Q  174 taatggctgagattgtttgttggtctagaacat 206  Q
    |||| || || |||||||  | |||||||||||    
T  15813465 taatagcggatattgtttcctcgtctagaacat 15813433  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 15721136 - 15721058
Alignment:
Q  53 gtgaagctgtactcgaaattaatatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggt 131  Q
    |||||||||||||| ||||| ||||||||||||||||| | ||||||||||| | ||||| ||||||||| || |||||    
T  15721136 gtgaagctgtactcaaaattcatatcaggaacaccacatcttggtaacaagagtagttgtaaagtctcggagtctaggt 15721058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 204
Target Start/End: Complemental strand, 15723640 - 15723495
Alignment:
Q  56 aagctgtactcgaaattaatatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttga 155  Q
    |||| ||||||| | || |||||||||| |||||| | ||| ||| ||| ||||||| ||||||||||||||||||    | ||||||||||||| ||||    
T  15723640 aagccgtactcgtatttcatatcaggaataccacatcttggaaacgagaattgttgtaaagtctcggtgtttaggt---gaccagtaacttggagattga 15723544  T
Q  156 aattttgttggtagatcttaatggctgagattgtttgttggtctagaac 204  Q
    ||  |||||||||| ||||||| || || |||||||  | |||||||||    
T  15723543 aaaattgttggtaggtcttaatagcggatattgtttccttgtctagaac 15723495  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 261
Target Start/End: Complemental strand, 15819313 - 15819204
Alignment:
Q  152 ttgaaattttgttggtagatcttaatggctgagattgtttgttggtctagaacattactgaatggcccatattgttggaggtagccgaaatcgtacaaat 251  Q
    ||||||| | |||||||| |||||| |||| ||| ||||| ||||||||||   ||| |||| |||||| |||||| ||||||||||||||  | |||||    
T  15819313 ttgaaatatcgttggtaggtcttaagggctaagactgtttcttggtctagagtgttattgaacggcccagattgttcgaggtagccgaaattttgcaaat 15819214  T
Q  252 attgtttgat 261  Q
    ||||||||||    
T  15819213 attgtttgat 15819204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 15819452 - 15819363
Alignment:
Q  10 cttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcaggaacaccacaacgtggtaa 99  Q
    |||||||||||| | ||||||||| ||| |||| |||||||||||| ||  ||||  |||||| ||||||||||||||||| ||||||||    
T  15819452 cttaggaaaccattggtttcctttcggatacgatatatcattggtggagtcgtacgtgaaattcatatcaggaacaccacatcgtggtaa 15819363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 15717293 - 15717236
Alignment:
Q  74 atatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggt 131  Q
    ||||| ||||||||||| |||||||||| |||||||||| |||||||||||| |||||    
T  15717293 atatcgggaacaccacatcgtggtaacatgatttgttgtaaagtctcggtgtctaggt 15717236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 15729844 - 15729716
Alignment:
Q  74 atatcaggaacaccacaacgtggtaacaagatttgtt-gtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatc 172  Q
    |||||||||| |||||| || |||||| |||||| || || ||||||||||||||||||    | ||||||||||||| ||||||  |||||||||  ||    
T  15729844 atatcaggaataccacatcgcggtaacgagatttttttgtaaagtctcggtgtttaggt---gaccagtaacttggagattgaaaaattgttggtacgtc 15729748  T
Q  173 ttaatggctgagattgtttgttggtctagaac 204  Q
    ||||| || || |||||||  | |||||||||    
T  15729747 ttaatagcggatattgtttcctcgtctagaac 15729716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 15836502 - 15836413
Alignment:
Q  10 cttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcaggaacaccacaacgtggtaa 99  Q
    |||||||||||| | ||||||||| ||||| || ||||||||||| ||| ||||||  ||| |  ||||||||||||| || ||||||||    
T  15836502 cttaggaaaccattggtttcctttcggaaaagatatatcattggttaagttgtacttcaaaatcctatcaggaacaccgcatcgtggtaa 15836413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 15837909 - 15837838
Alignment:
Q  4 ttttttcttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcag 80  Q
    ||||| ||||| |||||||||||||||||| |||||| || ||||     ||||||||||||||||||| |||||||    
T  15837909 tttttccttagtaaaccacttgtttcctttcggaaacaacttatc-----tgaagctgtactcgaaattcatatcag 15837838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 33100239 - 33100110
Alignment:
Q  74 atatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatct 173  Q
    |||||||||| |||||| || |||||| |||||| |||| ||||||||||||||||||    | ||||||||||||| ||||||  |||||||||| |||    
T  33100239 atatcaggaataccacatcgcggtaacgagattttttgtaaagtctcggtgtttaggt---taccagtaacttggagattgaaaaattgttggtaggtct 33100143  T
Q  174 taatggctgagattgtttgttggtctagaacat 206  Q
    |||| || || |||||||  | |||||||||||    
T  33100142 taatagcggatattgtttcctcgtctagaacat 33100110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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