View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2241_low_11 (Length: 268)
Name: NF2241_low_11
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2241_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 255
Target Start/End: Complemental strand, 39524416 - 39524164
Alignment:
| Q |
3 |
aaaagtaatactggttataatagagtattagagtaaatactttatcaggaaaaaatggaatatgctcacaaaataatagccaaatttttggtattgaagg |
102 |
Q |
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| T |
39524416 |
aaaagtaatactagttataatagagtattagagtaaatactttatcaggaaaaaatggaatatgcgcacaaaataatagccaaatttttggtaatgaagg |
39524317 |
T |
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| Q |
103 |
acaagtttattgcatgaatttaatcattatgcataaaattatcattgaattattctatcatataatatagttgtattttttgctattgctgtttagtttt |
202 |
Q |
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| T |
39524316 |
acaagtttattgcatgaatttaatcattatgcataaaattatcattgaattattctatcatataatatagttgtattttttgctattgctgtttagtttt |
39524217 |
T |
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| Q |
203 |
cttgcaaaattttcttctaatatgaataatgtagttagggcagcacacaggtt |
255 |
Q |
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| T |
39524216 |
cttgcaaaattttcttctaatatgaataatgtagttagggcagcacacaggtt |
39524164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 79 - 255
Target Start/End: Complemental strand, 23260896 - 23260722
Alignment:
| Q |
79 |
tagccaaatttttggtattgaaggacaagtttattgcatgaatttaatcattatgcataaaattatcattgaattattctatcatataatatagttgtat |
178 |
Q |
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|||||||| |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23260896 |
tagccaaaattttggaactgaaggacaagtttattgcatgaacttaatcattatgcataaaattatcattgaattattctatcatataatatagttgtat |
23260797 |
T |
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| Q |
179 |
tttttgctattgctgtttagttttcttgcaaaattttcttctaatatgaataatgtagttagggcagcacacaggtt |
255 |
Q |
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| T |
23260796 |
tttttgctattgc--ttcagttttcttgcaaaattttctcctaatatgaataatgtagttagggcagcacataggtt |
23260722 |
T |
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