View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2241_low_13 (Length: 255)

Name: NF2241_low_13
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2241_low_13
NF2241_low_13
[»] chr2 (2 HSPs)
chr2 (59-242)||(36645587-36645770)
chr2 (13-152)||(36645851-36645991)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 59 - 242
Target Start/End: Complemental strand, 36645770 - 36645587
Alignment:
Q  59 gaaggttccttcaagtccagacccaatacacaatagcgacagtgtttccgttgaggatgaaaacaaaccataaatcggaagggtgaggatggtttcttca 158  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  36645770 gaaggttcctacaagtccagacccaatacacaatagcgacagtgtttccgttgaggatgaaaacaaaccacaaatcggaagggcgaggatggtttcttca 36645671  T
Q  159 ggtccaaacccattacacaatagacttgttaactctgttggaactaaaaacatgccataaatcgggggattgggaatgattcct 242  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36645670 ggtccaaacccattacacaatagactcattaactctgttggaactaaaaacatgccataaatcgggggattggggatgattcct 36645587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 36645991 - 36645851
Alignment:
Q  13 tcatcaagaatcaaatatggggaaaac-cagaaattggagaattgcggaaggttccttcaagtccagacccaatacacaatagcgacagtgtttccgttg 111  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| |||    
T  36645991 tcatcaagaatcaaatatggggaaaagacagaaattggagaattgcggaaggttccttcaagtccagacccaatacacaatagcgacattgactccattg 36645892  T
Q  112 aggatgaaaacaaaccataaatcggaagggtgaggatggtt 152  Q
    |||||||||||||| || |||||||| || |||||| ||||    
T  36645891 aggatgaaaacaaatcacaaatcggagggttgaggaaggtt 36645851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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