View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2241_low_16 (Length: 249)

Name: NF2241_low_16
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2241_low_16
NF2241_low_16
[»] chr5 (1 HSPs)
chr5 (146-249)||(15220647-15220749)
[»] chr7 (1 HSPs)
chr7 (143-191)||(9406130-9406178)
[»] chr1 (1 HSPs)
chr1 (146-191)||(29863422-29863467)
[»] chr8 (1 HSPs)
chr8 (143-191)||(36574023-36574071)
[»] chr4 (1 HSPs)
chr4 (145-179)||(27291399-27291433)
[»] chr6 (1 HSPs)
chr6 (146-191)||(7962698-7962743)
[»] chr2 (1 HSPs)
chr2 (146-191)||(2429992-2430037)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 146 - 249
Target Start/End: Original strand, 15220647 - 15220749
Alignment:
Q  146 aatacacaatttccaatattttatttctacttttggtttgttatctcctacctacctttcaaagacaaattagcatttcccatctttttaattgcaatat 245  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||    
T  15220647 aatacacaatttccaatattttatttctacctttggtttgttatctcctacctacctttgaaagacaagttagcatttcccatc-ttttaattgcaatat 15220745  T
Q  246 ctct 249  Q
    ||||    
T  15220746 ctct 15220749  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 9406178 - 9406130
Alignment:
Q  143 aagaatacacaatttccaatattttatttctacttttggtttgttatct 191  Q
    ||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  9406178 aagaatacacaatttgcaagattttatttctacttttggtttcttatct 9406130  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 29863467 - 29863422
Alignment:
Q  146 aatacacaatttccaatattttatttctacttttggtttgttatct 191  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||||    
T  29863467 aatacacgatttccaagattttatttctacttttggttttttatct 29863422  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 36574071 - 36574023
Alignment:
Q  143 aagaatacacaatttccaatattttatttctacttttggtttgttatct 191  Q
    |||||||||||||||| || ||||||||| |||||||||||| ||||||    
T  36574071 aagaatacacaatttctaagattttatttatacttttggtttcttatct 36574023  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 27291399 - 27291433
Alignment:
Q  145 gaatacacaatttccaatattttatttctactttt 179  Q
    ||||||||||||||||||||||||||| |||||||    
T  27291399 gaatacacaatttccaatattttatttttactttt 27291433  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 7962698 - 7962743
Alignment:
Q  146 aatacacaatttccaatattttatttctacttttggtttgttatct 191  Q
    ||||||||||||| || |||| ||||||||||||||||| ||||||    
T  7962698 aatacacaatttctaagatttaatttctacttttggtttcttatct 7962743  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 2429992 - 2430037
Alignment:
Q  146 aatacacaatttccaatattttatttctacttttggtttgttatct 191  Q
    |||||||||||| ||| ||||||||| |||||||||||| ||||||    
T  2429992 aatacacaattttcaagattttatttttacttttggtttcttatct 2430037  T

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