View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2241_low_17 (Length: 249)
Name: NF2241_low_17
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2241_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30292263 - 30292494
Alignment:
| Q |
1 |
tttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatgcttat |
100 |
Q |
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| T |
30292263 |
tttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaacgttttaatgcttat |
30292362 |
T |
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| Q |
101 |
tatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatgaat |
200 |
Q |
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| T |
30292363 |
tatgcttgtatgctcta---------agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccactttcctactatgaat |
30292453 |
T |
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| Q |
201 |
aaattaatcaagaacaagttttgtgccacctcccctctgct |
241 |
Q |
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| T |
30292454 |
aaattaatcaagaacaagttttgtgccacctcctctctgct |
30292494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 30315763 - 30316003
Alignment:
| Q |
1 |
tttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg----- |
95 |
Q |
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| T |
30315763 |
tttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtga |
30315862 |
T |
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| Q |
96 |
---cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacc-tttct |
191 |
Q |
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| T |
30315863 |
tcaaatgttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacggcattatcttgtaattgtaactagagttccaccttttgt |
30315962 |
T |
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| Q |
192 |
actatgaataaattaatcaagaacaagttttgtgccacctc |
232 |
Q |
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| T |
30315963 |
actatgaataaattaatcaagaataagttttgtgccacctc |
30316003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 30304897 - 30305136
Alignment:
| Q |
1 |
tttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg----- |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
30304897 |
tttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtga |
30304996 |
T |
|
| Q |
96 |
---cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttcta |
192 |
Q |
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| T |
30304997 |
tcaaatattatgcaagtatgatatatggagctatagctaataatgagcgatgaataaaacggcattatcttgtaactataactagagttccacctttcta |
30305096 |
T |
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| Q |
193 |
ctatgaataaattaatcaagaacaagttttgtgccacctc |
232 |
Q |
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| T |
30305097 |
ctatgaataactgaatcaagaataagttttgagccacctc |
30305136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30287229 - 30287471
Alignment:
| Q |
1 |
tttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg----- |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
30287229 |
tttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtga |
30287328 |
T |
|
| Q |
96 |
---cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttcta |
192 |
Q |
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| T |
30287329 |
tcaaatgttatgcatgtatgctgtaaggaactatagctcataatgagaaaagaataaaacggcattatcttg------taactagagttcctcctttcta |
30287422 |
T |
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| Q |
193 |
ctatgaataaattaatcaagaacaagttttgtgccacctcccctctgct |
241 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||| ||||||| |
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| T |
30287423 |
ctatgaataaattaatcaagaataagttttgtgcctcctcctctctgct |
30287471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 30300105 - 30300338
Alignment:
| Q |
1 |
tttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg----- |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||| |||||||| |
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| T |
30300105 |
tttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcttatatcttcaattttgggagtattttaatgagtga |
30300204 |
T |
|
| Q |
96 |
---cttattatgcttgttcgctctaagaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttcta |
192 |
Q |
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|||||||||||| ||| |||| || ||||||||||||||||| ||||||||||||| || |||| || ||||||||||||||||| | |
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| T |
30300205 |
tcaaatattatgcttgtatgctgtaaggagtcatagctcatagtgagcagagaataaaacggcaatatcttg------tatctagagttccacctttcca |
30300298 |
T |
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| Q |
193 |
ctatgaataaattaatcaagaacaagttttgtgccacctc |
232 |
Q |
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| T |
30300299 |
ccatgaataaattaatcaagaataagttttgtgccacctc |
30300338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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