View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2241_low_18 (Length: 241)
Name: NF2241_low_18
Description: NF2241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2241_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33632713 - 33632491
Alignment:
| Q |
1 |
tcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtcattggttagattttgttggagtactggaaggatgtgaatctgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632713 |
tcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtaattggttagattttgttggagtactggaaggatgtgaatctgata |
33632614 |
T |
|
| Q |
101 |
tattgaacatttatttaattgtcattcagtttctatttttcatacattaccattcactgacctgttttctgttttcatcctgtcttttcttcctactttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632613 |
tattgaacatttatttaattgtcattcagtttctatttttcatacattaccattcactgacctgttttctgttttcatcctgtcttttcttcctactttt |
33632514 |
T |
|
| Q |
201 |
atgcgtagtaaatatagcctctt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
33632513 |
atgcgtagtaaatatagcctctt |
33632491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 29193237 - 29193452
Alignment:
| Q |
1 |
tcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtcattggttagattttgttggagtactggaaggatgtgaatctgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| ||||| |
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| T |
29193237 |
tcagaatttatgtcaacaaacaagcactcttacaggtataaaaaag----ttgtcattggttagattttgttggagtaatgggaggatgtgaatatgata |
29193332 |
T |
|
| Q |
101 |
tattgaacatttatttaattgtcattcagtttctatttttcatacattaccattcactgacctgttttctgttttcatcc--tgtcttttcttcctactt |
198 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
29193333 |
tattgaccatttatttaattgtcattcagtttctattttttatacactaccattcactgacctgttttctgttttcatcctttgtcttttcctcctactc |
29193432 |
T |
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| Q |
199 |
ttatgcgtagtaaatatagc |
218 |
Q |
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||||||| |||||||||||| |
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| T |
29193433 |
ttatgcggagtaaatatagc |
29193452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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